SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001142389 |
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Gene Symbol: | PNPLA4 |
Description: | Homo sapiens patatin-like phospholipase domain containing 4 (PNPLA4), transcript variant 2, mRNA. |
Gene Location: | chrX(-):7866803-7895780 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chrX:g.7899151A>G | ICGC_sm179707 | RK035_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chrX:g.7899458T>G | 13_236 | SJMB035_D | Medulloblastoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-24-3p |
ttgtaCTGAGCCcaggttt |
0 | UGGCUCAG | m7b | Created | no TS | -0.164 |
-0.09 |
hsa-miR-378g |
ttgtactgAGCCCAGgttt |
0 | ACUGGGCU | m7b | Created | no TS | -0.166 |
0.35 |
hsa-miR-4437 |
ttgtacTGAGCCCAggttt |
0 | UGGGCUCA | m8a | Created | no TS | -0.363 |
-1.62 |
hsa-miR-450b-3p |
ttgtactGATCCCAggttt |
0 | UUGGGAUC | m7b | Disrupted | -0.17 | no TS |
1.23 |
hsa-miR-4674 |
ttgtactGAGCCCAGgttt |
0 | CUGGGCUC | m8a | Created | no TS | -0.199 |
-11.73 |
hsa-miR-4713-3p |
ttgtactGATCCCAggttt |
0 | UGGGAUCC | m7a | Disrupted | -0.133 | no TS |
0.06 |
hsa-miR-4797-3p |
ttgTACTGAGcccaggttt |
7 |
UCUCAGUA | m7b | (m6c->m7b) | no TS | -0.028 |
0.24 |
hsa-miR-638 |
ttgtactGATCCCaggttt |
0 | AGGGAUCG | m6b | Disrupted | -0.141 | no TS |
13.91 |
hsa-miR-769-3p |
ttgtactGATCCCAGgttt |
0 | CUGGGAUC | m8a | Disrupted | -0.17 | no TS |
2.07 |