SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001011516
Gene Symbol: PDLIM5
Description: Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 2, mRNA.
Gene Location: chr4(+):95373037-95509370
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.94587147T>G COSN5065329 HCC93 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-31-3p ttttcaactGCATAGCAaa
 4
 UGCUAUGC m8a (m7b->m8a) -0.188000 -0.496000 -4.910000
hsa-miR-3616-5p ttttcaACTTCATagcaaa
 0 AUGAAGUG m7a Disrupted NA NA -1.110000
hsa-miR-382-5p ttttCAACTTCatagcaaa
 0 GAAGUUGU m7a Disrupted NA NA 1.460000
hsa-miR-31-3p ttttcaactGCATAGCAaa
 4
 UGCUAUGC m8a (m7b->m8a) -0.188000 -0.496000 -4.910000
hsa-miR-3616-5p ttttcaACTTCATagcaaa
 0 AUGAAGUG m7a Disrupted NA NA -1.110000
hsa-miR-382-5p ttttCAACTTCatagcaaa
 0 GAAGUUGU m7a Disrupted NA NA 1.460000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94587149A>G COSN5065331 HX29T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-31-3p ttcaacttCATAGCAaaat
 4
 UGCUAUGC m7a Disrupted -0.188000 no TS -1.330000
hsa-miR-3616-5p ttcaACTTCATagcaaaat
 0 AUGAAGUG m7a Disrupted NA NA -1.110000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94587687C>T COSN9246448 AOCS-153-1-2 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1305 atttggctcTTGAAAAagg
 0 UUUUCAAC m7a (m6b->m7a) no TS 0.054000 -0.070000
hsa-miR-30a-3p atttggctcCTGAAAaagg
 2
 CUUUCAGU m6b Disrupted 0.021000 no TS 0.390000
hsa-miR-30d-3p atttggctcCTGAAAaagg
 2
 CUUUCAGU m6b Disrupted 0.017000 no TS 0.470000
hsa-miR-30e-3p atttggctcCTGAAAaagg
 2
 CUUUCAGU m6b Disrupted 0.021000 no TS 0.310000
hsa-miR-335-5p atttgGCTCTTGAaaaagg
 0 UCAAGAGC m8a Created no TS -0.258000 -1.570000
hsa-miR-4433-3p atttggCTCCTGaaaaagg
 2
 ACAGGAGU m6b Disrupted -0.103000 no TS 2.150000
hsa-miR-4459 atttggCTCCTGaaaaagg
 2
 CCAGGAGG m6b Disrupted -0.086000 no TS 0.070000
hsa-miR-4768-3p atttggCTCCTGaaaaagg
 2
 CCAGGAGA m6b Disrupted -0.086000 no TS 0.630000
hsa-miR-498 atttggctCTTGAAAaagg
 0 UUUCAAGC m7a Created no TS 0.010000 -10.060000
hsa-miR-505-5p attTGGCTCCtgaaaaagg
 7
 GGGAGCCA m7b (m7b->m6b) -0.220000 no TS -0.320000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.94588198T>C COSN6849989 RK144_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1295b-5p ataaCTGGGTaaaataaac
 0 CACCCAGA m6b Disrupted -0.226000 no TS 0.010000
hsa-miR-1912 ataaCTGGGTAaaataaac
 0 UACCCAGA m7a Disrupted -0.223000 no TS 0.160000
hsa-miR-2681-5p ataactgGGTAAAAtaaac
 7
 GUUUUACC m7b Disrupted -0.128000 no TS 0.020000
hsa-miR-3130-5p ataACTGGGTAaaataaac
 0 UACCCAGU m8a Disrupted -0.542000 no TS 7.080000
hsa-miR-4482-5p ataACTGGGTaaaataaac
 0 AACCCAGU m7b (m7b->m6b) -0.542000 no TS 6.210000
hsa-miR-5591-3p ataacTGGGTAaaataaac
 8
 AUACCCAU m6b Disrupted -0.221000 no TS -0.140000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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