SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_003687
Gene Symbol: PDLIM4
Description: Homo sapiens PDZ and LIM domain 4 (PDLIM4), transcript variant 2, mRNA.
Gene Location: chr5(+):131593350-131609147
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr5:g.132272393A>G COSN9925826 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3117-5p tacagTAGTGTCTgcttag
 0 AGACACUA m8a Created no TS -0.109000 -4.530000
hsa-miR-3166 tacagtagTGTCTGCttag
 2
 CGCAGACA m7b Created -0.052000 -0.257000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr5:g.132272669G>T COSN1307316 HCC39T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-361-3p aggtgagCTGGGGGcgaga
 1
 UCCCCCAG m7b Disrupted -0.130000 no TS -0.010000
hsa-miR-4267 aggtGAGCTGGgggcgaga
 1
 UCCAGCUC m7b Disrupted -0.142000 no TS 9.080000
hsa-miR-361-3p aggtgagCTGGGGGcgaga
 1
 UCCCCCAG m7b Disrupted -0.130000 no TS -0.010000
hsa-miR-4267 aggtGAGCTGGgggcgaga
 1
 UCCAGCUC m7b Disrupted -0.142000 no TS 9.080000
hsa-miR-361-3p aggtgagCTGGGGGcgaga
 1
 UCCCCCAG m7b Disrupted -0.13 no TS 2.75
hsa-miR-4267 aggtGAGCTGGgggcgaga
 1
 UCCAGCUC m7b Disrupted -0.142 no TS 9.08

Mutation Mutation ID Sample Name Cancer Type
chr5:g.132272838T>C COSN1307318 HX12T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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