SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_203487
Gene Symbol: PCDH9
Description: Homo sapiens protocadherin 9 (PCDH9), transcript variant 2, mRNA.
Gene Location: chr13(-):66876965-67804468
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.66302932A>G COSN6218349 RK122_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-192-3p atgactTTGGCAGaataaa
 0 CUGCCAAU m7a Created NA NA -0.550000
hsa-miR-4727-5p atgacttTGGCAGAataaa
 6
 AUCUGCCA m7b Created -0.177000 -0.651000 -2.640000
hsa-miR-4769-3p atgacttTGGCAGAataaa
 6
 UCUGCCAU m7a Created -0.224000 -0.421000 -8.690000
hsa-miR-4778-5p atgactttgACAGAATaaa
 15
 AAUUCUGU m7b (m7b->m6b) -0.273000 -0.085000 0.950000
hsa-miR-544a atgactttgGCAGAATaaa
 0 AUUCUGCA m7a (m6a->m7a) NA NA -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66302960G>A COSN5343018 RK309_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-888-3p attttTGTCAGTttgtgag
 0 GACUGACA m7b Created no TS -0.241000 -0.780000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66303262C>T COSN7413366 8066067 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3671 atccaaATTTGAacattct
 0 AUCAAAUA m6b Created no TS 0.032000 -5.400000
hsa-miR-607 atccaaATTTGAACattct
 0 GUUCAAAU m8a Created no TS -0.022000 -0.010000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66303279G>C COSN1620786 RK159_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4529-3p gttgcacGTCCAAacaaat
 0 AUUGGACU m6b Created no TS -0.118000 -3.330000
hsa-miR-4804-5p gttgcaCGTCCAAacaaat
 0 UUGGACGG m7a Created no TS -0.195000 -12.540000
hsa-miR-507 gttgcacGTGCAAAcaaat
 5
 UUUUGCAC m7b Disrupted -0.371000 -0.272000 0.630000
hsa-miR-557 gttgcacGTGCAAACaaat
 5
 GUUUGCAC m8a Disrupted -0.324000 -0.235000 2.320000


Mutation Mutation ID Sample Name Cancer Type
chr13:g.66303521T>A COSN7413367 8066500 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr13:g.66303578G>T 0_437 Small cell lung cancer
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.66303729G>A COSN6218350 RK200_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5579-5p acttaattaGTACCATtaa
 0 UAUGGUAC m7b (m7b->m6b) -0.222000 no TS 3.460000
hsa-miR-5681b acttaattAATACCattaa
 0 AGGUAUUG m6b Created no TS -0.052000 -0.020000


Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304157A>G COSN8133810 ASHPC_0029_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304160G>A COSN8133811 PCSI_0086_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-124-5p acgttagTGAACACttgta
 0 CGUGUUCA m7b Created no TS -0.131000 -1.960000
hsa-miR-4255 acgttagtGAACACTtgta
 0 CAGUGUUC m7b Created no TS -0.151000 -1.710000
hsa-miR-4436b-5p acgttAGTGGACacttgta
 0 GUCCACUU m7a Disrupted -0.249000 -0.249000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304236T>C COSN8587760 J10_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-34c-5p tgggACTGCCatacttgac
 0 AGGCAGUG m6b Created no TS -0.142000 0.950000
hsa-miR-4274 tggGACTGCTatacttgac
 7
 CAGCAGUC m7b (m7b->m6c) -0.460000 -0.153000 1.360000
hsa-miR-449b-5p tgggACTGCCatacttgac
 0 AGGCAGUG m6b Created no TS -0.129000 -1.150000
hsa-miR-4519 tgggACTGCTatacttgac
 7
 CAGCAGUG m6b Disrupted -0.111000 no TS 0.220000
hsa-miR-4524a-5p tgggaCTGCTATacttgac
 20
 AUAGCAGC m7a Disrupted -0.235000 -0.235000 0.160000
hsa-miR-4524b-5p tgggaCTGCTATacttgac
 20
 AUAGCAGC m7a Disrupted -0.235000 -0.235000 0.360000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304422T>G COSN5726254 HCC162 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-500a-3p tctctccatGGTGCAaatt
 0 AUGCACCU m6b Created no TS -0.212000 -0.400000
hsa-miR-767-5p tctctccATGGTGCAaatt
 0 UGCACCAU m8a Created no TS -0.405000 -5.540000
hsa-miR-500a-3p tctctccatGGTGCAaatt
 0 AUGCACCU m6b Created no TS -0.212000 -0.400000
hsa-miR-767-5p tctctccATGGTGCAaatt
 0 UGCACCAU m8a Created no TS -0.405000 -5.540000

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304455A>G COSN1160904 HCC12T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-145-5p ttgtttACTGGAattgatt
 0 GUCCAGUU m6b Created no TS -0.151000 -5.520000
hsa-miR-325 ttgttTACTAGaattgatt
 12
 CCUAGUAG m6b Disrupted -0.129000 no TS No effect
hsa-miR-4712-5p ttgttTACTGGAattgatt
 0 UCCAGUAC m7a Created no TS -0.161000 No effect
hsa-miR-5195-3p ttgtttACTGGAattgatt
 0 AUCCAGUU m6b Created no TS -0.144000 -3.150000
hsa-miR-545-5p ttgTTTACTGgaattgatt
 0 UCAGUAAA m7b (m6c->m7b) no TS -0.116000 -0.010000
hsa-miR-5571-5p ttgtttactAGAATTGatt
 0 CAAUUCUC m7a (m7a->m6a) NA NA 0.010000
hsa-miR-628-3p ttgtTTACTAGAattgatt
 12
 UCUAGUAA m8a Disrupted -0.330000 no TS No effect
hsa-miR-770-5p ttgttTACTGGAattgatt
 0 UCCAGUAC m7a Created no TS -0.161000 -0.010000
hsa-miR-145-5p ttgtttACTGGAattgatt
 0 GUCCAGUU m6b Created no TS -0.151 -5.52
hsa-miR-325 ttgttTACTAGaattgatt
 0 CCUAGUAG m6b Disrupted -0.129 no TS No effect
hsa-miR-4712-5p ttgttTACTGGAattgatt
 0 UCCAGUAC m7a Created no TS -0.161 No effect
hsa-miR-5195-3p ttgtttACTGGAattgatt
 0 AUCCAGUU m6b Created no TS -0.144 -3.15
hsa-miR-545-5p ttgTTTACTGgaattgatt
 0 UCAGUAAA m7b (m6c->m7b) no TS -0.116 -0.01
hsa-miR-5571-5p ttgtttactAGAATTGatt
 0 CAAUUCUC m7a (m7a->m6a) NA NA 0.01
hsa-miR-628-3p ttgtTTACTAGAattgatt
 0 UCUAGUAA m8a Disrupted -0.33 no TS No effect
hsa-miR-770-5p ttgttTACTGGAattgatt
 0 UCCAGUAC m7a Created no TS -0.161 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304540A>G COSN1160905 HCC54T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-331-5p gggATACCTAtaactttgt
 1
 CUAGGUAU m7b (m7b->m6c) -0.129000 no TS 1.120000
hsa-miR-552 gggatACCTGTaactttgt
 0 AACAGGUG m6b Created no TS -0.129000 -1.340000
hsa-miR-331-5p gggATACCTAtaactttgt
 0 CUAGGUAU m7b (m7b->m6c) -0.129 no TS 1.12
hsa-miR-552 gggatACCTGTaactttgt
 0 AACAGGUG m6b Created no TS -0.129 -1.34

Mutation Mutation ID Sample Name Cancer Type
chr13:g.66304546A>C COSN8545390 tumor_4135099 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-129-1-3p ctagcAGGGCTacctataa
 0 AAGCCCUU m6b Created no TS -0.185000 -0.050000
hsa-miR-129-2-3p ctagcAGGGCTacctataa
 0 AAGCCCUU m6b Created no TS -0.185000 -0.800000
hsa-miR-188-5p ctagcAGGGATacctataa
 16
 CAUCCCUU m6b Disrupted -0.424000 -0.282000 11.540000
hsa-miR-3173-5p ctaGCAGGGCtacctataa
 0 UGCCCUGC m7b (m6c->m7b) no TS -0.283000 -0.460000
hsa-miR-331-5p ctagcagggATACCTAtaa
 1
 CUAGGUAU m7b (m7b->m6b) -0.129000 no TS 0.820000
hsa-miR-3927 ctagcagggCTACCTataa
 0 CAGGUAGA m6b Created no TS -0.136000 -0.010000
hsa-miR-4678 ctagcagggATACCTataa
 1
 AAGGUAUU m6b Disrupted -0.108000 no TS 0.040000
hsa-miR-4687-5p ctagcAGGGCTacctataa
 0 CAGCCCUC m6b Created no TS -0.184000 -1.510000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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