SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_019035
Gene Symbol: PCDH18
Description: Homo sapiens protocadherin 18 (PCDH18), mRNA.
Gene Location: chr4(-):138440073-138453629
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr4:g.137519356A>T COSN15598700 C0058T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr4:g.137519509A>G COSN1994137 RK182_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-205-5p gggaATGAAGGtagtaagc
 0 UCCUUCAU m7b Created no TS -0.123000 -4.850000
hsa-miR-4724-3p gggaatGAAGGTAgtaagc
 0 GUACCUUC m7b Created no TS -0.164000 -0.370000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137519761T>A COSN15224907 LP6005334-DNA_E03 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4662a-3p acaCTATCTTgattgtact
 14
 AAAGAUAG m7b (m7b->m6c) -0.090000 no TS 0.010000
hsa-miR-4777-5p acactATCTAGAttgtact
 0 UUCUAGAU m7b Created no TS -0.111000 -1.710000

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137520568T>G COSN4827825 tumor_4189998 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][Burkitt_lymphoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5696 tttagAAATGAagaatcat
 4
 CUCAUUUA m6b Created 0.022000 0.022000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137520573G>A COSN14658962 8067509 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4263 aactttTTAGAAattaaga
 0 AUUCUAAG m6b Disrupted -0.035000 no TS No effect
hsa-miR-4775 aactttttaAAAATTAAga
 0 UUAAUUUU m8a (m7a->m8a) 0.175000 0.116000 No effect
hsa-miR-4799-5p aacttTTTAGAaattaaga
 0 AUCUAAAU m6b Disrupted -0.025000 no TS 0.020000
hsa-miR-576-5p aactttTTAGAAattaaga
 0 AUUCUAAU m6b Disrupted -0.017000 no TS 0.220000
hsa-miR-590-3p aactttttaAAAATTAaga
 0 UAAUUUUA m7a (m6a->m7a) 0.224000 0.288000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr4:g.137520851T>G COSN9904024 C0072T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-338-5p gtgatTATTGTaatctgta
 0 AACAAUAU m6b Created 0.027000 -0.023000 No effect
hsa-miR-5692a gtgATTATTTtaatctgta
 2
 CAAAUAAU m7b (m7b->m6c) 0.279000 0.286000 0.010000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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