SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_033056
Gene Symbol: PCDH15
Description: Homo sapiens protocadherin-related 15 (PCDH15), transcript variant A, mRNA.
Gene Location: chr10(-):55580859-56561051
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53821104C>A COSN5877073 RK211_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-606 atcttgAGTAGTTg
 0 AAACUACU m7b Created no TS -0.150000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53821247T>C COSN8530964 tumor_4120193 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3910 ctgactTGCCTTTatctta
 0 AAAGGCAU m7a Created NA NA -0.880000
hsa-miR-4422 ctgactTGCTTTTatctta
 0 AAAAGCAU m7a Disrupted NA NA 0.620000
hsa-miR-4484 ctgacttGCCTTTatctta
 0 AAAAGGCG m6b Created no TS -0.155000 -0.900000
hsa-miR-548an ctgactTGCCTTTatctta
 0 AAAAGGCA m7b Created no TS -0.320000 -1.090000


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53821264C>A COSN8640339 J87_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53821708A>G COSN4714852 tumor_4160468 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-302c-5p taaaaagATGTTAAcctca
 0 UUUAACAU m7b Created no TS -0.054000 No effect
hsa-miR-3143 taaaaagATGTTAacctca
 0 AUAACAUU m6b Created no TS -0.039000 0.015000
hsa-miR-889 taaaaaGATATTAAcctca
 0 UUAAUAUC m8a Disrupted -0.200000 no TS 2.880000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53821803T>A COSN6973867 8058184 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-452-3p gtcttcaAGATGAacatca
 0 CUCAUCUG m6b Created no TS -0.092000 -0.170000
hsa-miR-4635 gtCTTCAAGAtgaacatca
 4
 UCUUGAAG m8a (m7b->m8a) -0.180000 -0.300000 -0.820000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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