SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001142771
Gene Symbol: PCDH15
Description: Homo sapiens protocadherin-related 15 (PCDH15), transcript variant A, mRNA.
Gene Location: chr10(-):55562532-56561051
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53802812A>T COSN5287345 RK101_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1257 tgcattgttATTCACTaca
 0 AGUGAAUG m7a (m7a->m6a) NA NA 0.420000


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53802829A>G COSN1492689 RK007_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53802980A>C COSN15140413 LP6005500-DNA_D01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-191-5p tttatggTCCGTTaagcac
 0 CAACGGAA m6b Created no TS -0.210000 -0.840000
hsa-miR-3619-3p tttATGGTCCgttaagcac
 0 GGGACCAU m7b (m6c->m7b) no TS -0.290000 -0.190000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803028T>C COSN5287346 RK030_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3129-3p aagctTTAGTTatagactg
 1
 AAACUAAU m6b Disrupted -0.035000 no TS -0.040000
hsa-miR-5583-5p aagctTTAGTTatagactg
 1
 AAACUAAU m6b Disrupted -0.038000 no TS -0.110000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803048T>C COSN5877065 RK211_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3156-5p attttGATCTTTatcataa
 0 AAAGAUCU m7a Disrupted NA NA No effect
hsa-miR-3161 attttgatcCTTATCAtaa
 3
 CUGAUAAG m7b (m6b->m7b) -0.124000 -0.257000 No effect
hsa-miR-541-5p attttgATCCTTatcataa
 3
 AAAGGAUU m6b Created -0.177000 -0.286000 -0.070000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803253C>A COSN15307467 LP6005500-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4263 tttaaTTAGAAaaataggc
 7
 AUUCUAAG m6b Created 0.160000 0.142000 No effect
hsa-miR-4639-5p tttaaTTAGCAAaataggc
 0 UUGCUAAG m7a Disrupted -0.288000 -0.188000 No effect
hsa-miR-576-5p tttaATTAGAAaaataggc
 9
 AUUCUAAU m7b Created 0.149000 0.014000 -0.010000


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803417A>T COSN15283239 SM-4B295 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803520T>C COSN5287347 RK169_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Mutation Mutation ID Sample Name Cancer Type
chr10:g.53803920A>G COSN1492690 RK089_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804014A>G COSN5877066 RK308_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1200 ccctgaCTCAGGAttaaaa
 13
 CUCCUGAG m7b Disrupted -0.067000 no TS 0.010000
hsa-miR-4324 ccctgaCTCAGGattaaaa
 17
 CCCUGAGA m6b Disrupted -0.181000 -0.161000 0.280000
hsa-miR-4740-3p ccctgaCTCGGGattaaaa
 0 GCCCGAGA m6b Created no TS -0.113000 -1.740000
hsa-miR-500a-5p ccctgactcAGGATTAaaa
 9
 UAAUCCUU m7a (m7a->m6a) 0.028000 no TS No effect
hsa-miR-544b ccctgaCTCAGGattaaaa
 13
 ACCUGAGG m6b Disrupted -0.024000 no TS No effect
hsa-miR-5702 ccCTGACTCAggattaaaa
 9
 UGAGUCAG m8a (m8a->m7b) -0.086000 -0.024000 0.390000


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804064T>C COSN4714844 tumor_4108101 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804406T>A COSN5251946 HX30T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-579 aacCAAATGAtttgcgact
 6
 UUCAUUUG m7b (m6c->m7b) 0.106000 0.238000 -0.010000
hsa-miR-644b-3p aacCAAATGAtttgcgact
 6
 UUCAUUUG m7b (m6c->m7b) 0.117000 0.258000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804441A>T COSN8712426 AOCS-117-3-3 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-320a atgaAGCTTTagatgggaa
 0 AAAAGCUG m6b Created -0.071000 0.015000 -0.240000
hsa-miR-320b atgaAGCTTTagatgggaa
 0 AAAAGCUG m6b Created -0.071000 0.015000 -0.230000
hsa-miR-320c atgaAGCTTTagatgggaa
 0 AAAAGCUG m6b Created -0.071000 0.015000 -0.080000
hsa-miR-320d atgaAGCTTTagatgggaa
 0 AAAAGCUG m6b Created -0.071000 0.015000 -0.130000
hsa-miR-4429 atgaAGCTTTagatgggaa
 0 AAAAGCUG m6b Created -0.071000 0.015000 No effect
hsa-miR-4509 atgaagCTTTAGatgggaa
 2
 ACUAAAGG m6b Created -0.097000 -0.021000 No effect
hsa-miR-9-3p atgaAGCTTTAgatgggaa
 0 AUAAAGCU m7b Created -0.278000 -0.211000 -0.160000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804708C>T 0_348 Melanoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4496 catatatTTTCCTactaat
 6
 GAGGAAAC m6b Created 0.051 0.107 No effect
hsa-miR-5584-5p catataTTTCCCTactaat
 4
 CAGGGAAA m7b Disrupted 0.002 no TS 0.28

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53804739T>C COSN5877067 RK171_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-300 ataggatacCTTGTATAgg
 2
 UAUACAAG m8a (m7a->m8a) 0.127000 0.157000 No effect
hsa-miR-381 ataggatacCTTGTATAgg
 2
 UAUACAAG m8a (m7a->m8a) 0.127000 0.157000 No effect
hsa-miR-3973 ataggaTACTTTGTatagg
 2
 ACAAAGUA m8a Disrupted -0.040000 -0.084000 0.020000
hsa-miR-4761-5p ataggatACCTTGTatagg
 0 ACAAGGUG m7a Created NA NA -0.050000
hsa-miR-520d-5p ataggataCTTTGTAtagg
 2
 CUACAAAG m7b Disrupted 0.134000 0.078000 0.220000
hsa-miR-520g ataggatACTTTGTatagg
 13
 ACAAAGUG m7a Disrupted -0.076000 -0.076000 No effect
hsa-miR-520h ataggatACTTTGTatagg
 13
 ACAAAGUG m7a Disrupted -0.076000 -0.076000 No effect
hsa-miR-524-5p ataggataCTTTGTAtagg
 2
 CUACAAAG m7b Disrupted 0.124000 0.078000 0.010000
hsa-miR-548l ataggATACTTTgtatagg
 8
 AAAAGUAU m7b Disrupted 0.111000 -0.066000 0.030000
hsa-miR-624-3p ataggatACCTTGTatagg
 0 CACAAGGU m7b Created no TS -0.064000 -0.160000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53805685T>A COSN5251947 HX28T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3184-3p tcactAGACTTTaatagtt
 0 AAAGUCUC m7a Disrupted NA NA 2.770000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53805708G>T COSN8933736 SS6003149 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3672 gttagggaAGTCTCAcatt
 2
 AUGAGACU m7b Disrupted -0.101000 no TS 0.420000
hsa-miR-3938 gttAGGGAATTctcacatt
 2
 AAUUCCCU m8a Created -0.144000 -0.239000 No effect
hsa-miR-580 gttagggaATTCTCAcatt
 13
 UUGAGAAU m7b Created -0.031000 -0.056000 No effect
hsa-miR-617 gttagGGAAGTCTcacatt
 2
 AGACUUCC m8a Disrupted -0.085000 no TS 0.020000
hsa-miR-873-3p gttagggaAGTCTCacatt
 2
 GGAGACUG m6b Disrupted -0.033000 no TS 0.880000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53805743A>C COSN4714845 tumor_4102009 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-203 tagaacgacCATTTCAtaa
 7
 GUGAAAUG m7b (m6b->m7b) 0.149000 0.199000 No effect
hsa-miR-224-3p tagaacgACCATTTcataa
 0 AAAAUGGU m7b Created no TS -0.006000 -0.110000
hsa-miR-522-3p tagaacgACCATTTcataa
 0 AAAAUGGU m7b Created no TS 0.003000 No effect


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53805828G>C COSN15443721 AOCS-095-1-4 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr10:g.53805898C>T COSN5877068 RK214_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1252 ttctcttgTTCCTTCatct
 0 AGAAGGAA m7b Created 0.116000 -0.066000 -0.250000
hsa-miR-3179 ttctcttgtCCCTTCatct
 0 AGAAGGGG m6b Disrupted -0.100000 no TS 3.210000
hsa-miR-4475 ttctcttGTCCCTTcatct
 0 CAAGGGAC m7b Disrupted -0.214000 no TS 3.350000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53806056A>T COSN6405281 HX33T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-3p cacctGTAAATaattaatt
 0 AAUUUACU m6b Disrupted 0.025000 0.003000 No effect
hsa-miR-944 cacctgtaAATAATTaatt
 0 AAAUUAUU m7b Disrupted -0.024000 0.000000 0.030000

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53806109T>G COSN8933737 SS6003320 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-520d-5p ccctaaTTTGTAaaatgaa
 2
 CUACAAAG m6b Created 0.134000 0.160000 -0.050000
hsa-miR-524-5p ccctaaTTTGTAaaatgaa
 2
 CUACAAAG m6b Created 0.124000 0.143000 -0.220000
hsa-miR-548c-3p ccctaATTTTTaaaatgaa
 3
 CAAAAAUC m6b Disrupted 0.555000 0.431000 No effect

Mutation Mutation ID Sample Name Cancer Type
chr10:g.53806350G>A ICGC_DD795AAE-2A78-11E2-B303-24FD496BB9B8 CPCG_0103_Pr_P_P6 ProstateCancer(OICR,CA)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3646 taacctaTCATTTaaacat
 0 AAAAUGAA m6b Created -0.231 -0.225 0.2

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser