SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002542
Gene Symbol: OGG1
Description: Homo sapiens 8-oxoguanine DNA glycosylase (OGG1), nuclear gene encoding mitochondrial protein, transcript variant 1a, mRNA.
Gene Location: chr3(+):9791627-9799089
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.9757338C>T COSN7769444 ASHPC_0003_Pa_P_2 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5682 gggagacaGTGCTAaggat
 0 GUAGCACC m6b Created no TS -0.128000 0.500000
hsa-miR-626 gggAGACAGCgctaaggat
 3
 AGCUGUCU m7b (m7b->m6b) -0.162000 no TS 2.020000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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