SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_205860
Gene Symbol: NR5A2
Description: Homo sapiens nuclear receptor subfamily 5, group A, member 2 (NR5A2), transcript variant 2, mRNA.
Gene Location: chr1(+):199996769-200146550
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.200174397A>G COSN7983180 PCSI_0083_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4643 aaatgATGTGTCagggtat
 0 GACACAUG m7a Created -0.167000 -0.167000 -0.070000
hsa-miR-4732-3p aaatgatgtGTCAGGGtat
 15
 GCCCUGAC m7b (m6c->m7b) -0.039000 -0.344000 -0.230000
hsa-miR-642a-3p aaatgATGTGTCagggtat
 1
 AGACACAU m7b Created -0.020000 -0.298000 -0.030000
hsa-miR-642b-3p aaatgATGTGTCagggtat
 1
 AGACACAU m7b Created -0.020000 -0.298000 -0.020000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.200176103G>C COSN7197747 8061178 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3616-5p cattCACTTCATtaaatgt
 0 AUGAAGUG m8a Created no TS -0.118000 -1.520000
hsa-miR-4795-5p cattCACTTCattaaatgt
 0 AGAAGUGG m6b Created no TS -0.033000 -1.890000
hsa-miR-573 cattCACTTCAttaaatgt
 0 CUGAAGUG m7b Created no TS -0.109000 -5.790000

Mutation Mutation ID Sample Name Cancer Type
chr1:g.200176119A>G COSN5363411 RK272_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4699-5p tgtctgtaAATCTTCatca
 0 AGAAGAUU m7b Disrupted 0.030000 0.037000 1.000000
hsa-miR-600 tgtCTGTAAGTcttcatca
 0 ACUUACAG m8a Created no TS -0.031000 0.010000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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