SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006167 |
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Gene Symbol: | NKX3-1 |
Description: | Homo sapiens NK3 homeobox 1 (NKX3-1), transcript variant 1, mRNA. |
Gene Location: | chr8(-):23536205-23540450 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.23678735->A | cosmic_v64_1870281 | NA | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-5007-3p |
tgcaaCATATGAgtgtttt |
0 | AUCAUAUG | m7b | Disrupted | -0.211000 | no TS |
8.270000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.23680215G>A | COSN2269976 | RK006_C02 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1269a |
ttcattttAGTCCAGattt |
6 |
CUGGACUG | m7a | Disrupted | 0.035000 | 0.035000 | No effect |
hsa-miR-1269b |
ttcattttAGTCCAGattt |
6 |
CUGGACUG | m7a | Disrupted | 0.035000 | 0.035000 | No effect |
hsa-miR-378a-3p |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.353000 |
0.050000 |
hsa-miR-378b |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.566000 | -0.332000 |
0.220000 |
hsa-miR-378c |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.353000 |
0.670000 |
hsa-miR-378d |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.353000 |
0.170000 |
hsa-miR-378e |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.353000 |
0.140000 |
hsa-miR-378f |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.332000 |
3.100000 |
hsa-miR-378h |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.576000 | -0.342000 | No effect |
hsa-miR-378i |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.587000 | -0.353000 |
0.090000 |
hsa-miR-422a |
ttcattttAGTCCAGattt |
2 |
ACUGGACU | m7b | Disrupted | -0.576000 | -0.342000 | No effect |
hsa-miR-4638-3p |
ttcattttaGTCCAGattt |
2 |
CCUGGACA | m6b | Disrupted | -0.271000 | -0.167000 | No effect |
hsa-miR-4782-5p |
ttcattttaATCCAGAttt |
2 |
UUCUGGAU | m7b | (m6b->m7b) | -0.092000 | -0.237000 |
-0.290000 |
hsa-miR-5706 |
ttcattttaATCCAGAttt |
2 |
UUCUGGAU | m7b | (m6b->m7b) | -0.086000 | -0.240000 |
-1.310000 |
hsa-miR-1269a |
ttcattttAGTCCAGattt |
0 | CUGGACUG | m7a | Disrupted | 0.035 | 0.035 | No effect |
hsa-miR-1269b |
ttcattttAGTCCAGattt |
0 | CUGGACUG | m7a | Disrupted | 0.035 | 0.035 | No effect |
hsa-miR-378a-3p |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.353 |
0.05 |
hsa-miR-378b |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.566 | -0.332 |
0.22 |
hsa-miR-378c |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.353 |
0.67 |
hsa-miR-378d |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.353 |
0.17 |
hsa-miR-378e |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.353 |
0.14 |
hsa-miR-378f |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.332 |
3.1 |
hsa-miR-378h |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.576 | -0.342 | No effect |
hsa-miR-378i |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.587 | -0.353 |
0.09 |
hsa-miR-422a |
ttcattttAGTCCAGattt |
0 | ACUGGACU | m7b | Disrupted | -0.576 | -0.342 | No effect |
hsa-miR-4638-3p |
ttcattttaGTCCAGattt |
0 | CCUGGACA | m6b | Disrupted | -0.271 | -0.167 | No effect |
hsa-miR-4782-5p |
ttcattttaATCCAGAttt |
0 | UUCUGGAU | m7b | (m6b->m7b) | -0.092 | -0.237 |
-0.29 |
hsa-miR-5706 |
ttcattttaATCCAGAttt |
0 | UUCUGGAU | m7b | (m6b->m7b) | -0.086 | -0.24 |
-1.31 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.23680407A>T | COSN1362893 | HX5T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr8:g.23681114A>T | COSN6599613 | ICGC_MB60 | [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1179 |
gcacaccAATGCTattgga |
0 | AAGCAUUC | m6b | Created | no TS | -0.066000 |
-2.850000 |
hsa-miR-9-5p |
gcacACCAAAGctattgga |
2 |
UCUUUGGU | m7b | Disrupted | -0.087000 | no TS |
3.810000 |