SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_201551 |
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Gene Symbol: | NELL1 |
Description: | Homo sapiens NEL-like 1 (chicken) (NELL1), transcript variant 1, mRNA. |
Gene Location: | chr11(+):20691116-21597229 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575044G>C | COSN8217734 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3940-5p |
ggactCAACCCAgaagaat |
0 | GUGGGUUG | m7b | Created | no TS | -0.225000 |
-16.810000 |
hsa-miR-4314 |
ggactcaaCCCAGAagaat |
0 | CUCUGGGA | m6b | Created | no TS | -0.165000 |
-6.380000 |
hsa-miR-4507 |
ggactCAACCCAGaagaat |
0 | CUGGGUUG | m8a | Created | no TS | -0.234000 |
-19.910000 |
hsa-miR-4520a-5p |
ggactcaACGCAGaagaat |
0 | CCUGCGUG | m6b | Disrupted | -0.243000 | no TS |
13.940000 |
hsa-miR-4520b-5p |
ggactcaACGCAGaagaat |
0 | CCUGCGUG | m6b | Disrupted | -0.243000 | no TS |
13.940000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575108T>A | COSN1130536 | HCC141T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3613-3p |
ttggtTTTTTTGTttgttt |
5 |
ACAAAAAA | m8a | Disrupted | -0.072000 | -0.036000 |
-0.980000 |
hsa-miR-4803 |
ttggtttTTATGTTtgttt |
0 | UAACAUAA | m7b | Created | no TS | -0.111000 | No effect |
hsa-miR-3613-3p |
ttggtTTTTTTGTttgttt |
2 |
ACAAAAAA | m8a | Disrupted | -0.072 | -0.036 |
-0.98 |
hsa-miR-4803 |
ttggtttTTATGTTtgttt |
0 | UAACAUAA | m7b | Created | no TS | -0.111 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575162C>T | COSN4891997 | MPCC_0038_Pa_C | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-21-3p |
acctgaggaTGGTGTTtgg |
0 | CAACACCA | m7b | (m6c->m7b) | no TS | -0.153000 |
0.650000 |
hsa-miR-3591-3p |
acctgaggaTGGTGTTTgg |
0 | AAACACCA | m8a | (m7b->m8a) | no TS | -0.153000 |
-4.100000 |
hsa-miR-5196-3p |
acctGAGGATGgtgtttgg |
0 | UCAUCCUC | m7b | Created | no TS | -0.172000 |
-2.190000 |
hsa-miR-21-3p |
acctgaggaTGGTGTTtgg |
0 | CAACACCA | m7b | (m6c->m7b) | no TS | -0.153000 |
0.650000 |
hsa-miR-3591-3p |
acctgaggaTGGTGTTTgg |
0 | AAACACCA | m8a | (m7b->m8a) | no TS | -0.153000 |
-4.100000 |
hsa-miR-5196-3p |
acctGAGGATGgtgtttgg |
0 | UCAUCCUC | m7b | Created | no TS | -0.172000 |
-2.190000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575241C>A | COSN1130537 | HCC88T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-10a-3p |
agtgccgtGAATTTaagtc |
0 | CAAAUUCG | m6b | Created | no TS | 0.006000 |
-5.360000 |
hsa-miR-3177-3p |
agtGCCGTGCAtttaagtc |
1 |
UGCACGGC | m8a | Disrupted | -0.618000 | no TS |
2.680000 |
hsa-miR-4760-3p |
agtgccgTGAATTTaagtc |
0 | AAAUUCAU | m7a | Created | NA | NA |
-5.740000 |
hsa-miR-10a-3p |
agtgccgtGAATTTaagtc |
0 | CAAAUUCG | m6b | Created | no TS | 0.006000 |
-5.360000 |
hsa-miR-3177-3p |
agtGCCGTGCAtttaagtc |
1 |
UGCACGGC | m8a | Disrupted | -0.618000 | no TS |
2.680000 |
hsa-miR-4760-3p |
agtgccgTGAATTTaagtc |
0 | AAAUUCAU | m7a | Created | NA | NA |
-5.740000 |
hsa-miR-10a-3p |
agtgccgtGAATTTaagtc |
0 | CAAAUUCG | m6b | Created | no TS | 0.006 |
-5.36 |
hsa-miR-3177-3p |
agtGCCGTGCAtttaagtc |
1 |
UGCACGGC | m8a | Disrupted | -0.618 | no TS |
2.68 |
hsa-miR-4760-3p |
agtgccgTGAATTTaagtc |
0 | AAAUUCAU | m7a | Created | NA | NA |
-5.74 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575350T>G | COSN6998085 | 8058330 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3613-3p |
gttgatgtaTTTTTTGgtt |
5 |
ACAAAAAA | m7b | (m7b->m6c) | -0.072000 | -0.036000 |
0.090000 |
hsa-miR-548ae |
gttgatgtAGTTTTTGgtt |
0 | CAAAAACU | m8a | Created | no TS | -0.023000 |
-6.390000 |
hsa-miR-548ah-3p |
gttgatgtAGTTTTTGgtt |
0 | CAAAAACU | m8a | Created | no TS | -0.023000 |
-10.850000 |
hsa-miR-548aj-3p |
gttgatgtAGTTTTTggtt |
0 | UAAAAACU | m7b | Created | no TS | -0.023000 |
-8.140000 |
hsa-miR-548am-3p |
gttgatgtAGTTTTTGgtt |
0 | CAAAAACU | m8a | Created | no TS | -0.023000 |
-9.460000 |
hsa-miR-548aq-3p |
gttgatgtAGTTTTTGgtt |
0 | CAAAAACU | m8a | Created | no TS | -0.023000 |
-10.340000 |
hsa-miR-548x-3p |
gttgatgtAGTTTTTggtt |
0 | UAAAAACU | m7b | Created | no TS | -0.023000 |
-7.640000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575565C>A | COSN4697380 | PD4107a | [breast][NS][carcinoma][ductal_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr11:g.21575566C>A | COSN4697381 | PD4107a | [breast][NS][carcinoma][ductal_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3653 |
gtgctgaacCTTCTTAaat |
1 |
CUAAGAAG | m7b | (m7b->m6c) | -0.165000 | -0.012000 |
-1.250000 |