SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_019080
Gene Symbol: NDFIP2
Description: Homo sapiens Nedd4 family interacting protein 2 (NDFIP2), transcript variant 2, mRNA.
Gene Location: chr13(+):80055258-80130212
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.79556036G>A ICGC_sm404285 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-497-3p acagattGTGGTTTaattt
 0 CAAACCAC m7b Disrupted -0.507 -0.105 2.44
hsa-miR-606 acagattGTAGTTTaattt
 0 AAACUACU m7a Created NA NA -0.29

Mutation Mutation ID Sample Name Cancer Type
chr13:g.79556037G>T ICGC_sm404286 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-497-3p cagattGTGGTTTaatttt
 0 CAAACCAC m7b Disrupted -0.507 -0.105 2.44

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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