SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_207481
Gene Symbol:	NCKAP5
Description:	Homo sapiens NCK-associated protein 5 (NCKAP5), transcript variant 1, mRNA.
Gene Location:	chr2(-):133429371-134326031
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.132672043A>C			COSN1788575		RK130_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-142-5p	atgtgaactCTTTATaatt	13	CAUAAAGU	m6b	Created	0.003000	-0.006000	-0.540000
hsa-miR-340-5p	atgtgaactCTTTATAAtt	13	UUAUAAAG	m8a	(m7a->m8a)	-0.013000	-0.153000	No effect
hsa-miR-4311	atgtgaaCTCTTTataatt	0	GAAAGAGA	m6b	Created	no TS	-0.052000	-0.010000
hsa-miR-5590-3p	atgtgaactCTTTATaatt	13	AAUAAAGU	m6b	Created	0.006000	-0.003000	-0.620000
hsa-miR-583	atgtgaaCTCTTTataatt	0	CAAAGAGG	m6b	Created	no TS	-0.067000	-0.050000
hsa-miR-142-5p	atgtgaactCTTTATaatt	13	CAUAAAGU	m6b	Created	0.003000	-0.006000	-0.540000
hsa-miR-340-5p	atgtgaactCTTTATAAtt	13	UUAUAAAG	m8a	(m7a->m8a)	-0.013000	-0.153000	No effect
hsa-miR-4311	atgtgaaCTCTTTataatt	0	GAAAGAGA	m6b	Created	no TS	-0.052000	-0.010000
hsa-miR-5590-3p	atgtgaactCTTTATaatt	13	AAUAAAGU	m6b	Created	0.006000	-0.003000	-0.620000
hsa-miR-583	atgtgaaCTCTTTataatt	0	CAAAGAGG	m6b	Created	no TS	-0.067000	-0.050000
hsa-miR-142-5p	atgtgaactCTTTATaatt	0	CAUAAAGU	m6b	Created	0.003	-0.006	-0.54
hsa-miR-340-5p	atgtgaactCTTTATAAtt	0	UUAUAAAG	m8a	(m7a->m8a)	-0.013	-0.153	No effect
hsa-miR-4311	atgtgaaCTCTTTataatt	0	GAAAGAGA	m6b	Created	no TS	-0.052	-0.01
hsa-miR-5590-3p	atgtgaactCTTTATaatt	0	AAUAAAGU	m6b	Created	0.006	-0.003	-0.62
hsa-miR-583	atgtgaaCTCTTTataatt	0	CAAAGAGG	m6b	Created	no TS	-0.067	-0.05

Mutation			Mutation ID		Sample Name		Cancer Type
chr2:g.132672683C>T			COSN5781559		HX24T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-183-5p	gaatcaGTGCCATgctctt	12	UAUGGCAC	m7b	Disrupted	-0.170000	no TS	2.010000
hsa-miR-3117-5p	gaatcAGTGTCatgctctt	1	AGACACUA	m6b	Created	-0.112000	-0.222000	-0.630000
hsa-miR-425-5p	gaatcaGTGTCATgctctt	1	AAUGACAC	m7b	Created	-0.163000	-0.295000	-2.620000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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