SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_153604 |
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Gene Symbol: | MYOCD |
Description: | Homo sapiens myocardin (MYOCD), transcript variant 1, mRNA. |
Gene Location: | chr17(+):12569206-12670651 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12763658C>T | COSN1081768 | TCGA-AP-A051-01 | [endometrium][NS][carcinoma][endometrioid_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-33a-5p |
ccCAATGCACcagtgctat |
2 |
GUGCAUUG | m8a | (m8a->m7a) | -0.216000 | -0.216000 | No effect | |
hsa-miR-33b-5p |
ccCAATGCACcagtgctat |
2 |
GUGCAUUG | m8a | (m8a->m7a) | -0.216000 | -0.216000 | No effect | |
hsa-miR-548q |
cccaatGCACCAGtgctat |
2 |
GCUGGUGC | m7b | Disrupted | 0.000000 | no TS | No effect | |
hsa-miR-586 |
cccAATGCATcagtgctat |
6 |
UAUGCAUU | m7b | (m6b->m7b) | -0.141000 | -0.282000 | No effect | |
hsa-miR-33a-5p |
ccCAATGCACcagtgctat |
0 | GUGCAUUG | m8a | (m8a->m7a) | -0.216 | -0.216 | No effect | |
hsa-miR-33b-5p |
ccCAATGCACcagtgctat |
0 | GUGCAUUG | m8a | (m8a->m7a) | -0.216 | -0.216 | No effect | |
hsa-miR-548q |
cccaatGCACCAGtgctat |
2 |
GCUGGUGC | m7b | Disrupted | 0 | no TS | No effect | |
hsa-miR-586 |
cccAATGCATcagtgctat |
0 | UAUGCAUU | m7b | (m6b->m7b) | -0.141 | -0.282 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12764410C>A | COSN9655572 | C0004T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3127-5p |
agatgagaaCCCTGAagaa |
3 |
AUCAGGGC | m6b | Disrupted | -0.079000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12766353T>C | COSN5838316 | HX34T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12766644G>T | COSN8831446 | AOCS-122-1-4 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3613-3p |
gtgtcTTTTTTGatgacaa |
11 |
ACAAAAAA | m7b | Created | 0.536000 | 0.673000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12766749T>C | 11_4432 | 2542 | Breast cancer | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-146a-5p |
tgtgtAGTTCTCttaagac |
8 |
UGAGAACU | m7b | Created | no TS | -0.143 | No effect | |
hsa-miR-146b-5p |
tgtgtAGTTCTCttaagac |
8 |
UGAGAACU | m7b | Created | no TS | -0.124 | No effect | |
hsa-miR-3925-5p |
tgtgtaGTTCTCTTaagac |
6 |
AAGAGAAC | m8a | Created | no TS | -0.124 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12766982G>T | COSN1193091 | BN50T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1238 |
aggGAGGAAGaagagggag |
4 |
CUUCCUCG | m7a | (m7a->m6a) | -0.285000 | -0.289000 |
0.240000 |
|
hsa-miR-4778-3p |
agggagGAAGAAGAgggag |
0 | UCUUCUUC | m8a | Disrupted | -0.946000 | -0.905000 |
1.180000 |
|
hsa-miR-877-3p |
agggaggaaGAAGAGGgag |
1 |
UCCUCUUC | m7b | (m7b->m6c) | -0.154000 | no TS |
1.140000 |
|
hsa-miR-1238 |
aggGAGGAAGaagagggag |
0 | CUUCCUCG | m7a | (m7a->m6a) | -0.285 | -0.289 |
0.24 |
|
hsa-miR-4778-3p |
agggagGAAGAAGAgggag |
1 |
UCUUCUUC | m8a | Disrupted | -0.946 | -0.905 |
0.58 |
|
hsa-miR-877-3p |
agggaggaaGAAGAGGgag |
0 | UCCUCUUC | m7b | (m7b->m6c) | -0.154 | no TS |
1.14 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.12767026G>C | COSN6650395 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.12767068G>T | COSN1193092 | BN42T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1236 |
gaaaGAAGAGaggaaagaa |
0 | CCUCUUCC | m6b | Disrupted | -0.405000 | -0.350000 |
1.970000 |
hsa-miR-1238 |
gaaagaagaGAGGAAagaa |
4 |
CUUCCUCG | m6b | Disrupted | -0.285000 | -0.194000 | No effect |
hsa-miR-141-5p |
gaaaGAAGATaggaaagaa |
0 | CAUCUUCC | m6b | Created | -0.167000 | -0.203000 |
-0.010000 |
hsa-miR-202-5p |
gaaagaagATAGGAAagaa |
0 | UUCCUAUG | m7a | Created | no TS | -0.098000 |
-0.090000 |
hsa-miR-3183 |
gaaagaAGAGAGGaaagaa |
2 |
GCCUCUCU | m7b | Disrupted | -0.445000 | -0.102000 |
0.010000 |
hsa-miR-337-3p |
gaaagaagATAGGAaagaa |
0 | CUCCUAUA | m6b | Created | no TS | -0.102000 |
-3.740000 |
hsa-miR-384 |
gaaagaagaTAGGAAagaa |
0 | AUUCCUAG | m6b | Created | no TS | -0.051000 |
-1.130000 |
hsa-miR-4723-3p |
gaaagaAGAGAGGaaagaa |
2 |
CCCUCUCU | m7b | Disrupted | -0.533000 | -0.158000 |
0.020000 |
hsa-miR-1236 |
gaaaGAAGAGaggaaagaa |
0 | CCUCUUCC | m6b | Disrupted | -0.405 | -0.35 |
1.97 |
hsa-miR-1238 |
gaaagaagaGAGGAAagaa |
0 | CUUCCUCG | m6b | Disrupted | -0.285 | -0.194 | No effect |
hsa-miR-141-5p |
gaaaGAAGATaggaaagaa |
0 | CAUCUUCC | m6b | Created | -0.167 | -0.203 |
-0.01 |
hsa-miR-202-5p |
gaaagaagATAGGAAagaa |
0 | UUCCUAUG | m7a | Created | no TS | -0.098 |
-0.09 |
hsa-miR-3183 |
gaaagaAGAGAGGaaagaa |
2 |
GCCUCUCU | m7b | Disrupted | -0.445 | -0.102 |
0.01 |
hsa-miR-337-3p |
gaaagaagATAGGAaagaa |
0 | CUCCUAUA | m6b | Created | no TS | -0.102 |
-3.74 |
hsa-miR-384 |
gaaagaagaTAGGAAagaa |
0 | AUUCCUAG | m6b | Created | no TS | -0.051 |
-1.13 |
hsa-miR-4723-3p |
gaaagaAGAGAGGaaagaa |
2 |
CCCUCUCU | m7b | Disrupted | -0.533 | -0.158 |
0.02 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
12763659 | rs113878045 | C | C |
hsa-miR-548q |
2 |
atGCACCAGtgct |
Disrupted |
N |
No Change |
G |
hsa-miR-4536-3p hsa-miR-4636 hsa-miR-517a-3p hsa-miR-517b-3p hsa-miR-517c-3p |
2 1 2 2 2 |
ATGCACGAgtgct atgCACGAGTgct aTGCACGAgtgct aTGCACGAgtgct aTGCACGAgtgct |
Created Created Created Created Created |
N N N N N |
No Change No Change No Change No Change No Change |
|||
12763674 | rs183584861 | C | C |
hsa-miR-6843-3p hsa-miR-6848-3p |
6 6 |
ggaAGACCAAtgg ggaAGACCAAtgg |
Disrupted Disrupted |
N N |
-0.12 -0.117 |
T |
hsa-miR-141-5p hsa-miR-7641 |
8 6 |
GGAAGATcaatgg ggaAGATCAAtgg |
Created Created |
N N |
-0.186 -0.094 |
|||
12764437 | rs180850229 | C | C |
hsa-miR-4787-5p hsa-miR-625-5p hsa-miR-6727-5p |
2 2 2 |
ttCCCCCGAagga TTCCCCCgaagga ttcCCCCGAAgga |
Disrupted Disrupted Disrupted |
N N N |
-0.203 -0.104 -0.18 |
T |
hsa-miR-205-5p hsa-miR-3127-5p hsa-miR-6783-5p hsa-miR-6798-5p |
2 2 2 2 |
ttccccTGAAGGA ttcCCCTGAAgga TTCCCCTgaagga ttCCCCTGAagga |
Created Created Created Created |
N N N N |
0.002 -0.075 -0.085 -0.108 |
|||
12766401 | rs191139944 | A | A |
hsa-miR-29b-2-5p hsa-miR-33a-5p hsa-miR-33b-5p hsa-miR-3680-3p hsa-miR-5087 |
3 2 2 2 3 |
taatgcAAACCAA tAATGCAAaccaa tAATGCAAaccaa taATGCAAAccaa taatgCAAACCAa |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.025 0.018 0.018 -0.002 -0.042 |
G |
hsa-miR-218-1-3p hsa-miR-659-3p |
3 3 |
taatgcGAACCAA taatgcGAACCAA |
Created Created |
N N |
-0.045 -0.03 |