SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_153050 |
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Gene Symbol: | MTMR3 |
Description: | Homo sapiens myotubularin related protein 3 (MTMR3), transcript variant 3, mRNA. |
Gene Location: | chr22(+):30279157-30426857 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30026049->T | ICGC_ssm_v3_5277 | BN15T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30026338C>T | COSN8997261 | 8069337 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4700-3p |
tcccTCCTGTGaggagctg |
1 |
CACAGGAC | m7a | Created | -0.031000 | -0.031000 | No effect |
hsa-miR-4722-5p |
tccCTCCTGCgaggagctg |
0 | GGCAGGAG | m7b | (m7b->m6b) | -0.263000 | -0.189000 |
0.250000 |
hsa-miR-513a-5p |
tccctCCTGTGAggagctg |
0 | UUCACAGG | m7b | Created | no TS | -0.045000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30026471G>A | COSN10029400 | C0098T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4749-3p |
gcaggcGAGGGGCtgggag |
0 | CGCCCCUC | m7b | Disrupted | -0.348000 | -0.227000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30027189A>G | COSN1897052 | RK052_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3177-3p |
ggggagGCCGTGCttgact |
9 |
UGCACGGC | m7b | Created | -0.213000 | -0.322000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30028196G>C | COSN15585972 | C0084T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-15a-5p |
tttttagcTGCTGCTctga |
8 |
UAGCAGCA | m7b | Disrupted | -0.597000 | -0.602000 |
0.010000 |
hsa-miR-15b-5p |
tttttagcTGCTGCTctga |
8 |
UAGCAGCA | m7b | Disrupted | -0.600000 | -0.615000 | No effect |
hsa-miR-16-5p |
tttttagcTGCTGCTctga |
8 |
UAGCAGCA | m7b | Disrupted | -0.579000 | -0.594000 | No effect |
hsa-miR-195-5p |
tttttagcTGCTGCTctga |
8 |
UAGCAGCA | m7b | Disrupted | -0.580000 | -0.595000 | No effect |
hsa-miR-28-5p |
tttttAGCTCCTgctctga |
2 |
AAGGAGCU | m7b | Created | -0.073000 | -0.087000 | No effect |
hsa-miR-3139 |
tttttAGCTCCTgctctga |
2 |
UAGGAGCU | m7b | Created | -0.080000 | -0.122000 | No effect |
hsa-miR-4633-3p |
ttttTAGCTCCTgctctga |
0 | AGGAGCUA | m8a | Created | no TS | -0.041000 |
-2.180000 |
hsa-miR-4722-5p |
tttttagCTCCTGCtctga |
0 | GGCAGGAG | m7b | Created | -0.263000 | -0.263000 |
0.310000 |
hsa-miR-610 |
tttTTAGCTCctgctctga |
2 |
UGAGCUAA | m7b | (m6b->m7b) | 0.044000 | 0.055000 |
-0.540000 |
hsa-miR-646 |
tttttAGCTGCTgctctga |
8 |
AAGCAGCU | m7b | Disrupted | -0.497000 | -0.471000 |
0.120000 |
hsa-miR-708-5p |
tttttAGCTCCTgctctga |
2 |
AAGGAGCU | m7b | Created | -0.093000 | -0.135000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30029188T>A | COSN5990807 | RK136_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3938 |
tagAGGGAATTtggtctga |
1 |
AAUUCCCU | m8a | Disrupted | 0.150000 | 0.085000 | No effect |
hsa-miR-4446-5p |
tagAGGGAAATtggtctga |
0 | AUUUCCCU | m8a | Created | 0.171000 | 0.267000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.30030632A>G | COSN1260674 | HX16T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4313 |
tcagcgaggAGGGGGCggg |
0 | AGCCCCCU | m7b | (m7b->m6c) | -0.412000 | -0.285000 |
-1.270000 |
hsa-miR-4667-3p |
tcagcgAGGAGGGggcggg |
0 | UCCCUCCU | m7b | Disrupted | -0.186000 | -0.116000 |
0.100000 |
hsa-miR-5193 |
tcagcGAGGAGGgggcggg |
2 |
UCCUCCUC | m7b | Disrupted | -0.068000 | -0.018000 |
0.130000 |
hsa-miR-4313 |
tcagcgaggAGGGGGCggg |
0 | AGCCCCCU | m7b | (m7b->m6c) | -0.412 | -0.285 |
-1.27 |
hsa-miR-4667-3p |
tcagcgAGGAGGGggcggg |
0 | UCCCUCCU | m7b | Disrupted | -0.186 | -0.116 |
0.1 |
hsa-miR-5193 |
tcagcGAGGAGGgggcggg |
2 |
UCCUCCUC | m7b | Disrupted | -0.068 | -0.018 |
0.13 |