SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_015847
Gene Symbol: MBD1
Description: Homo sapiens methyl-CpG binding domain protein 1 (MBD1), transcript variant 6, mRNA.
Gene Location: chr18(-):47795215-47808144
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.50269740G>A ICGC_1431358 TCGA-D1-A103-01A-11D-A10M-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-4267 cacgagcacGAGCTGGAac
 0 UCCAGCUC m8a (m8a->m7a) -0.314 -0.102 4.09

Mutation Mutation ID Sample Name Cancer Type
chr18:g.50269764G>C 9_79637 CRC-7-Tumor Colorectal adenocarcinoma
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser