SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000081 |
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Gene Symbol: | LYST |
Description: | Homo sapiens lysosomal trafficking regulator (LYST), mRNA. |
Gene Location: | chr1(-):235824344-236030220 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.235661414C>T | COSN14454339 | 8066037 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-421 |
tcctattcaTGTTGAagtg |
0 | AUCAACAG | m6b | Created | no TS | -0.047000 |
-0.110000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.235661685T>G | COSN1100132 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-495 |
gtgcaTTTGTTatggaaat |
2 |
AAACAAAC | m6b | Disrupted | 0.064000 | 0.005000 |
0.140000 |
|
hsa-miR-7-1-3p |
gtgcATTTGTTatggaaat |
3 |
CAACAAAU | m7b | Disrupted | 0.046000 | -0.002000 |
0.160000 |
|
hsa-miR-7-2-3p |
gtgcATTTGTTatggaaat |
3 |
CAACAAAU | m7b | Disrupted | 0.046000 | -0.002000 |
0.010000 |
|
hsa-miR-495 |
gtgcaTTTGTTatggaaat |
0 | AAACAAAC | m6b | Disrupted | 0.064 | 0.005 |
0.14 |
|
hsa-miR-7-1-3p |
gtgcATTTGTTatggaaat |
0 | CAACAAAU | m7b | Disrupted | 0.046 | -0.002 |
0.16 |
|
hsa-miR-7-2-3p |
gtgcATTTGTTatggaaat |
0 | CAACAAAU | m7b | Disrupted | 0.046 | -0.002 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.235661814A>G | COSN7209096 | 8013912 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4691-3p |
tcccatatgGTGGCTGtct |
0 | CCAGCCAC | m7b | (m6b->m7b) | no TS | -0.165000 |
0.320000 |
|
hsa-miR-5007-3p |
tccCATATGATggctgtct |
0 | AUCAUAUG | m8a | Disrupted | 0.049000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.235661972A>G | COSN5367916 | RK104_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3664-5p |
ggaggCAGAGTaattcttt |
0 | AACUCUGU | m6b | Created | no TS | -0.051000 |
-3.800000 |
|
hsa-miR-4714-5p |
ggaggCAGAGTaattcttt |
0 | AACUCUGA | m6b | Created | no TS | -0.062000 |
-5.980000 |
|
hsa-miR-4778-5p |
ggaggCAGAATaattcttt |
1 |
AAUUCUGU | m6b | Disrupted | -0.191000 | -0.206000 |
0.590000 |
|
hsa-miR-5001-3p |
ggAGGCAGAAtaattcttt |
0 | UUCUGCCU | m8a | (m8a->m7b) | -0.196000 | -0.094000 |
0.130000 |
|
hsa-miR-514a-5p |
ggaggCAGAGTAattcttt |
0 | UACUCUGG | m7a | Created | no TS | -0.055000 | No effect | |
hsa-miR-544a |
ggagGCAGAATaattcttt |
1 |
AUUCUGCA | m7a | Disrupted | -0.247000 | -0.247000 |
0.010000 |
|
hsa-miR-944 |
ggaggcagAATAATTcttt |
0 | AAAUUAUU | m7b | Disrupted | 0.134000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr1:g.235662463T>G | COSN7209097 | 8053200 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-543 |
aaagatAATGTTTaggact |
0 | AAACAUUC | m7a | Created | NA | NA |
-0.400000 |
|
hsa-miR-548c-3p |
aaagataATTTTTaggact |
1 |
CAAAAAUC | m6b | Disrupted | 0.362000 | 0.235000 |
0.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr1:g.235662578G>A | COSN7209098 | 8058336 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
235661217 | rs186176907 | A | A |
hsa-miR-548c-3p |
18 |
ATTTTTAtgtaaa |
Disrupted |
N |
0.055 |
G |
hsa-miR-3941 hsa-miR-466 hsa-miR-4672 hsa-miR-4731-3p hsa-miR-4801 |
15 15 15 17 17 |
attttTGTGTAAa attttTGTGTAAa attttTGTGTAAa atttTTGTGTAaa atttTTGTGTAaa |
Created Created Created Created Created |
N N N N N |
-0.125 -0.131 -0.127 -0.116 -0.123 |
|||
235661978 | rs12728185 | - | G |
hsa-miR-4727-5p hsa-miR-5001-3p hsa-miR-660-3p hsa-miR-6738-3p hsa-miR-6778-3p hsa-miR-6791-3p hsa-miR-6829-3p hsa-miR-6836-3p |
6 6 4 6 4 4 4 4 |
acaggaGGCAGAA acaggAGGCAGAA aCAGGAGGcagaa acaggaGGCAGAA acaGGAGGCAgaa acAGGAGGCAgaa acAGGAGGCAgaa acaGGAGGCAgaa |
Unknown Unknown Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N N N |
-0.096 -0.196 -0.159 -0.148 -0.112 -0.247 -0.247 -0.194 |
C |
hsa-miR-4520a-5p hsa-miR-4520b-5p |
8 8 |
acaggACGCAGAa acaggACGCAGAa |
Unknown Unknown |
N N |
-0.17 -0.17 |