SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_020873 |
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Gene Symbol: | LRRN1 |
Description: | Homo sapiens leucine rich repeat neuronal 1 (LRRN1), mRNA. |
Gene Location: | chr3(+):3841120-3889387 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr3:g.3847395T>G | COSN6426752 | HX13T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3065-5p |
tttttttttTTTGTTGtaa |
17 |
UCAACAAA | m7b | (m7b->m6c) | -0.246000 | -0.230000 |
1.370000 |
|
hsa-miR-3529-3p |
tttttttTTGTTGTTgtaa |
16 |
AACAACAA | m8a | Created | -0.564000 | -0.668000 |
1.390000 |
|
hsa-miR-3613-3p |
ttttttTTTTTTGTtgtaa |
0 | ACAAAAAA | m8a | Disrupted | -0.022000 | -0.030000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr3:g.3847636A>G | COSN15291136 | 0089_CRUK_PC_0089_T1_DNA | [prostate][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-425-5p |
caataatGTGTCATTtata |
0 | AAUGACAC | m8a | Created | no TS | -0.267000 |
-2.250000 |
hsa-miR-4643 |
caataATGTGTCatttata |
0 | GACACAUG | m7a | Created | NA | NA |
1.040000 |
hsa-miR-642a-3p |
caataATGTGTCatttata |
0 | AGACACAU | m7b | Created | no TS | -0.411000 |
-6.290000 |
hsa-miR-642b-3p |
caataATGTGTCatttata |
0 | AGACACAU | m7b | Created | no TS | -0.411000 |
-6.280000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
3847330 | rs116619315 | G | G |
hsa-miR-3529-3p |
18 |
aaTGTTGTAtcaa |
Disrupted |
N |
-0.061 |
T |
hsa-miR-3161 |
19 |
aatgttTTATCAA |
Created |
N |
-0.037 |
|||
3847395 | rs200876834 | T | T |
hsa-miR-3065-5p hsa-miR-3613-3p |
5 4 |
ttttttTTTGTTG tttTTTTTTGttg |
Disrupted Disrupted |
N N |
-0.016 0.008 |
G |
hsa-miR-3529-3p |
5 |
ttttTTGTTGTtg |
Created |
N |
-0.104 |