SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001129890
Gene Symbol: LRRC69
Description: Homo sapiens leucine rich repeat containing 69 (LRRC69), mRNA.
Gene Location: chr8(+):92114846-92231464
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.91219074T>G COSN4894184 PCSI_0100_Pa_P [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1277-3p atgccCTACGTAagatacc
 0 UACGUAGA m7a Created no TS -0.203000 -4.850000
hsa-miR-200a-5p atgccctacGTAAGATacc
 2
 CAUCUUAC m7b (m6c->m7b) -0.029000 -0.206000 -1.000000
hsa-miR-200b-5p atgccctacGTAAGATacc
 2
 CAUCUUAC m7b (m6c->m7b) -0.039000 -0.238000 -0.900000
hsa-miR-562 atgccCTACTTaagatacc
 5
 AAAGUAGC m6b Disrupted -0.076000 no TS 4.570000

Mutation Mutation ID Sample Name Cancer Type
chr8:g.91219101C>A COSN5116430 HCC169 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-520d-5p tctCTTTGTAaacacatta
 0 CUACAAAG m7b (m6b->m7b) no TS -0.188000 -9.000000
hsa-miR-524-5p tctCTTTGTAaacacatta
 0 CUACAAAG m7b (m6b->m7b) no TS -0.209000 -10.700000
hsa-miR-653 tctctttgTCAACACatta
 0 GUGUUGAA m7a Disrupted NA NA 3.030000
hsa-miR-520d-5p tctCTTTGTAaacacatta
 0 CUACAAAG m7b (m6b->m7b) no TS -0.188000 -9.000000
hsa-miR-524-5p tctCTTTGTAaacacatta
 0 CUACAAAG m7b (m6b->m7b) no TS -0.209000 -10.700000
hsa-miR-653 tctctttgTCAACACatta
 0 GUGUUGAA m7a Disrupted NA NA 3.030000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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