SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_152447 |
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Gene Symbol: | LRFN5 |
Description: | Homo sapiens leucine rich repeat and fibronectin type III domain containing 5 (LRFN5), mRNA. |
Gene Location: | chr14(+):42076763-42373752 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr14:g.41904332C>T | COSN7231000 | 8050939 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-718 |
tgatgacGGCGGAActggc |
4 |
CUUCCGCC | m7b | Disrupted | -0.228000 | no TS |
1.870000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr14:g.41904405T>- | ICGC_ssm_v3_107215 | HCC4T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr14:g.41904424A>G | COSN6249475 | RK122_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4659a-3p |
aaaaaAGAAGAAAagccta |
11 |
UUUCUUCU | m8a | Created | -0.210000 | -0.448000 |
-0.030000 |
hsa-miR-4659b-3p |
aaaaaAGAAGAAAagccta |
11 |
UUUCUUCU | m8a | Created | -0.210000 | -0.427000 |
-0.060000 |
hsa-miR-4778-3p |
aaaaAAGAAGAaaagccta |
0 | UCUUCUUC | m7a | Created | no TS | -0.081000 |
-0.005800 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
41904287 | rs187190762 | G | G |
hsa-miR-4659a-3p hsa-miR-4659b-3p hsa-miR-6875-3p |
11 11 13 |
gtcgtAGAAGAAA gtcgtAGAAGAAA gtcgtaGAAGAAA |
Disrupted Disrupted Disrupted |
N N N |
-0.21 -0.21 -0.026 |