SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_014646 |
---|---|
Gene Symbol: | LPIN2 |
Description: | Homo sapiens lipin 2 (LPIN2), mRNA. |
Gene Location: | chr18(-):2916991-3011945 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.2917061A>G | COSN1737352 | RK006_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.2917340A>T | COSN6119151 | RK149_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.2917658A>G | COSN7464814 | 8068548 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-101-3p |
tttttggGTACTGTgttgt |
4 |
UACAGUAC | m7b | Disrupted | -0.051000 | no TS |
0.020000 |
|
hsa-miR-3065-3p |
tttttgGGTGCTGtgttgt |
5 |
UCAGCACC | m7b | Created | -0.134000 | -0.261000 |
-0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.2918594C>G | COSN4772228 | tumor_4139696 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1275 |
aaagctTCCCCCAgcttaa |
2 |
GUGGGGGA | m7b | Disrupted | -0.146000 | -0.079000 |
0.350000 |
|
hsa-miR-25-5p |
aaagctTCCGCCagcttaa |
0 | AGGCGGAG | m6b | Created | no TS | -0.087000 |
-0.630000 |
|
hsa-miR-4271 |
aaagCTTCCCCCagcttaa |
2 |
GGGGGAAG | m8a | Disrupted | -0.291000 | -0.282000 | No effect | |
hsa-miR-4525 |
aaagctTCCCCCagcttaa |
2 |
GGGGGGAU | m6b | Disrupted | -0.060000 | no TS |
0.070000 |
|
hsa-miR-4665-5p |
aaagctTCCCCCAGcttaa |
2 |
CUGGGGGA | m8a | Disrupted | -0.133000 | -0.076000 |
0.090000 |
|
hsa-miR-4725-3p |
aaagCTTCCCCcagcttaa |
2 |
UGGGGAAG | m7b | Disrupted | -0.251000 | -0.261000 | No effect | |
hsa-miR-4730 |
aaagctTCCGCCAGcttaa |
0 | CUGGCGGA | m8a | Created | no TS | -0.142000 | No effect | |
hsa-miR-4731-5p |
aaagcttcCCCCAGCttaa |
1 |
UGCUGGGG | m7b | Disrupted | -0.321000 | -0.234000 |
0.070000 |
|
hsa-miR-5010-5p |
aaagctTCCCCCagcttaa |
2 |
AGGGGGAU | m6b | Disrupted | -0.049000 | no TS | No effect | |
hsa-miR-625-5p |
aaagcTTCCCCCagcttaa |
2 |
AGGGGGAA | m7b | Disrupted | -0.033000 | no TS | No effect | |
hsa-miR-637 |
aaagcttCCCCCAGcttaa |
2 |
ACUGGGGG | m7b | Disrupted | -0.099000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr18:g.2919119G>A | COSN6119156 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4711-5p |
ccatttaCTGATGCggttg |
2 |
UGCAUCAG | m7b | Disrupted | -0.082000 | no TS |
0.090000 |
|
hsa-miR-545-5p |
ccaTTTACTGAtgcggttg |
3 |
UCAGUAAA | m8a | Disrupted | 0.075000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr18:g.2920282C>T | COSN1204912 | BN37T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-181a-2-3p |
gcggcaccTCAGTGGgtgg |
2 |
ACCACUGA | m7b | Disrupted | 0.000000 | 0.003000 | No effect |
hsa-miR-18a-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-18b-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-4301 |
gcggcacctTAGTGGGtgg |
0 | UCCCACUA | m7b | (m6b->m7b) | -0.126000 | 0.000000 | No effect |
hsa-miR-4735-3p |
gcgGCACCTTagtgggtgg |
0 | AAAGGUGC | m7b | (m6c->m7b) | 0.019000 | 0.038000 | No effect |
hsa-miR-181a-2-3p |
gcggcaccTCAGTGGgtgg |
2 |
ACCACUGA | m7b | Disrupted | 0.000000 | 0.003000 | No effect |
hsa-miR-18a-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-18b-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-4301 |
gcggcacctTAGTGGGtgg |
0 | UCCCACUA | m7b | (m6b->m7b) | -0.126000 | 0.000000 | No effect |
hsa-miR-4735-3p |
gcgGCACCTTagtgggtgg |
0 | AAAGGUGC | m7b | (m6c->m7b) | 0.019000 | 0.038000 | No effect |
hsa-miR-181a-2-3p |
gcggcaccTCAGTGGgtgg |
2 |
ACCACUGA | m7b | Disrupted | 0.000000 | 0.003000 | No effect |
hsa-miR-18a-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-18b-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019000 | 0.038000 | No effect |
hsa-miR-4301 |
gcggcacctTAGTGGGtgg |
0 | UCCCACUA | m7b | (m6b->m7b) | -0.126000 | 0.000000 | No effect |
hsa-miR-4735-3p |
gcgGCACCTTagtgggtgg |
0 | AAAGGUGC | m7b | (m6c->m7b) | 0.019000 | 0.038000 | No effect |
hsa-miR-181a-2-3p |
gcggcaccTCAGTGGgtgg |
0 | ACCACUGA | m7b | Disrupted | 0 | 0.003 | No effect |
hsa-miR-18a-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019 | 0.038 | No effect |
hsa-miR-18b-5p |
gcgGCACCTTAgtgggtgg |
0 | UAAGGUGC | m8a | Created | 0.019 | 0.038 | No effect |
hsa-miR-4301 |
gcggcacctTAGTGGGtgg |
0 | UCCCACUA | m7b | (m6b->m7b) | -0.126 | 0 | No effect |
hsa-miR-4735-3p |
gcgGCACCTTagtgggtgg |
0 | AAAGGUGC | m7b | (m6c->m7b) | 0.019 | 0.038 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
2919114 | rs147362027 | G | |||||||
A |
hsa-miR-217 hsa-miR-4711-5p hsa-miR-6807-3p hsa-miR-7112-3p |
2 2 2 2 |
tgATGCAGTtgta TGATGCAgttgta tgATGCAGTtgta TGATGCAgttgta |
Created Created Created Created |
N N N N |
-0.017 -0.075 -0.017 -0.043 |
|||
2919211 | rs149858117 | G | G |
hsa-miR-423-3p hsa-miR-4787-5p |
2 1 |
ccccCCGAGCAgt cCCCCCGAgcagt |
Disrupted Disrupted |
N N |
-0.108 -0.129 |
A |
hsa-miR-1275 hsa-miR-328-5p hsa-miR-4665-5p hsa-miR-6751-5p hsa-miR-6795-5p hsa-miR-6803-5p hsa-miR-6885-5p hsa-miR-6887-5p hsa-miR-7109-5p |
1 1 1 1 1 1 1 1 1 |
cCCCCCAAgcagt CCCCCCAagcagt cCCCCCAAgcagt cCCCCCAAgcagt CCCCCCAagcagt cCCCCCAAgcagt CCCCCCAagcagt CCCCCCAagcagt CCCCCCAAgcagt |
Created Created Created Created Created Created Created Created Created |
N N N N N N N N N |
-0.049 -0.166 -0.042 -0.048 -0.125 -0.055 -0.166 -0.125 -0.165 |