SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002315
Gene Symbol: LMO1
Description: Homo sapiens LIM domain only 1 (rhombotin 1) (LMO1), mRNA.
Gene Location: chr11(-):8245856-8285406
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.8224590G>A COSN7287716 8035388 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-483-5p tccaggCCCGTCTgtccat
 6
 AAGACGGG m7b Disrupted -0.319000 -0.157000 No effect
hsa-miR-5683 tccaggccCATCTGTccat
 0 UACAGAUG m7b Created no TS 0.012000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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