SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001004317 |
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Gene Symbol: | LIN28B |
Description: | Homo sapiens lin-28 homolog B (C. elegans) (LIN28B), mRNA. |
Gene Location: | chr6(+):105404922-105531206 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105078816G>A | COSN6719530 | RK119_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-891b |
cctttacccAGTTGCAaag |
0 | UGCAACUU | m7a | (m6b->m7a) | no TS | -0.144000 |
-0.290000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105079195T>C | COSN2132326 | RK027_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4738-3p |
agatAGTTTCAaatttaac |
0 | UGAAACUG | m7a | Created | 0.047000 | -0.006000 | No effect | |
hsa-miR-548a-3p |
agatAGTTTTaaatttaac |
2 |
CAAAACUG | m6b | Disrupted | 0.088000 | 0.079000 | No effect | |
hsa-miR-548ar-3p |
agatAGTTTTAaatttaac |
2 |
UAAAACUG | m7a | Disrupted | 0.071000 | 0.069000 |
0.130000 |
|
hsa-miR-548e |
agatAGTTTTaaatttaac |
2 |
AAAAACUG | m6b | Disrupted | 0.096000 | 0.090000 |
-0.020000 |
|
hsa-miR-548f |
agatAGTTTTaaatttaac |
2 |
AAAAACUG | m6b | Disrupted | 0.099000 | 0.090000 |
0.380000 |
|
hsa-miR-5582-3p |
agatAGTTTTAaatttaac |
2 |
UAAAACUU | m7a | Disrupted | 0.119000 | 0.113000 |
0.010000 |
|
hsa-miR-4738-3p |
agatAGTTTCAaatttaac |
0 | UGAAACUG | m7a | Created | 0.047 | -0.006 | No effect | |
hsa-miR-548a-3p |
agatAGTTTTaaatttaac |
2 |
CAAAACUG | m6b | Disrupted | 0.088 | 0.079 | No effect | |
hsa-miR-548ar-3p |
agatAGTTTTAaatttaac |
2 |
UAAAACUG | m7a | Disrupted | 0.071 | 0.069 |
0.13 |
|
hsa-miR-548e |
agatAGTTTTaaatttaac |
2 |
AAAAACUG | m6b | Disrupted | 0.096 | 0.09 |
-0.02 |
|
hsa-miR-548f |
agatAGTTTTaaatttaac |
2 |
AAAAACUG | m6b | Disrupted | 0.099 | 0.09 |
0.38 |
|
hsa-miR-5582-3p |
agatAGTTTTAaatttaac |
2 |
UAAAACUU | m7a | Disrupted | 0.119 | 0.113 |
0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105079351C>G | COSN8493390 | J88_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-146a-5p |
tccAGTTCTCccgaatttg |
8 |
UGAGAACU | m7b | (m7b->m6b) | -0.045000 | no TS |
0.300000 |
|
hsa-miR-146b-5p |
tccAGTTCTCccgaatttg |
8 |
UGAGAACU | m7b | (m7b->m6b) | -0.045000 | no TS |
1.030000 |
|
hsa-miR-425-3p |
tccagttcTCCCGAatttg |
0 | AUCGGGAA | m6b | Disrupted | -0.229000 | no TS |
0.720000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105079874G>A | COSN9289104 | AOCS-057-1-2 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3925-3p |
aaatACTGGAGTtgagaat |
2 |
ACUCCAGU | m8a | Created | -0.254000 | -0.430000 |
-2.060000 |
|
hsa-miR-508-5p |
aaataCTGGAGTtgagaat |
0 | UACUCCAG | m7b | Created | -0.518000 | -0.676000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105080182T>C | COSN5617012 | RK155_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3918 |
tagtattGGCCCTGTtagg |
7 |
ACAGGGCC | m8a | Created | -0.009000 | -0.196000 | No effect | |
hsa-miR-4700-3p |
tagtattgGTCCTGTtagg |
3 |
CACAGGAC | m7b | Disrupted | 0.016000 | 0.049000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105080448G>T | COSN2132327 | RK167_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7a-3p |
atgggagacTTGTATAGtt |
0 | CUAUACAA | m8a | (m7b->m8a) | no TS | 0.198000 | No effect | |
hsa-let-7b-3p |
atgggagacTTGTATAGtt |
0 | CUAUACAA | m8a | (m7b->m8a) | no TS | 0.198000 | No effect | |
hsa-let-7f-1-3p |
atgggagacTTGTATAGtt |
0 | CUAUACAA | m8a | (m7b->m8a) | no TS | 0.207000 | No effect | |
hsa-miR-300 |
atgggagaCTTGTATAgtt |
0 | UAUACAAG | m8a | Created | no TS | 0.191000 |
-0.010000 |
|
hsa-miR-3184-3p |
atggGAGACTTgtatagtt |
0 | AAAGUCUC | m7b | Created | no TS | 0.092000 |
-0.020000 |
|
hsa-miR-381 |
atgggagaCTTGTATAgtt |
0 | UAUACAAG | m8a | Created | no TS | 0.212000 | No effect | |
hsa-miR-4666a-3p |
atgggagacTTGTATagtt |
0 | CAUACAAU | m6b | Created | no TS | 0.148000 |
-0.010000 |
|
hsa-miR-4789-5p |
atgggagacGTGTATAgtt |
2 |
GUAUACAC | m7b | (m7b->m6c) | -0.043000 | -0.177000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105080561C>A | COSN8493391 | 227_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1255b-2-3p |
gagaatctgAGTGGTatac |
0 | AACCACUU | m6b | Created | no TS | -0.020000 | No effect | |
hsa-miR-4330 |
gagaATCTGAGtggtatac |
0 | CCUCAGAU | m7b | Created | no TS | 0.056000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105081047T>C | COSN14760642 | CHC205T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4426 |
taccaaacCCATCTTatgg |
8 |
GAAGAUGG | m7b | Created | 0.111000 | 0.184000 |
-0.130000 |
|
hsa-miR-4464 |
tacCAAACCTatcttatgg |
10 |
AAGGUUUG | m7b | (m7b->m6b) | 0.100000 | 0.062000 |
2.110000 |
|
hsa-miR-4647 |
taccaaacCCATCTTatgg |
8 |
GAAGAUGG | m7b | Created | 0.128000 | 0.159000 |
-0.310000 |
|
hsa-miR-4662a-3p |
taccaaacCTATCTTatgg |
8 |
AAAGAUAG | m7b | Disrupted | 0.072000 | no TS |
0.130000 |
|
hsa-miR-4662b |
taccaaacCCATCTTatgg |
8 |
AAAGAUGG | m7b | Created | 0.125000 | 0.146000 | No effect | |
hsa-miR-4748 |
tacCAAACCTatcttatgg |
10 |
GAGGUUUG | m7b | (m7b->m6b) | 0.151000 | 0.081000 |
0.560000 |
|
hsa-miR-5087 |
tacCAAACCCatcttatgg |
10 |
GGGUUUGU | m7a | (m6a->m7a) | -0.008000 | -0.008000 |
0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105082102C>A | COSN8791878 | SS6003111 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-346 |
gctacatGGCAGACtataa |
2 |
UGUCUGCC | m7b | Disrupted | -0.190000 | no TS | No effect | |
hsa-miR-4659a-5p |
gctaCATGGCAGactataa |
5 |
CUGCCAUG | m8a | Disrupted | -0.113000 | no TS |
0.310000 |
|
hsa-miR-4659b-5p |
gctaCATGGCAgactataa |
5 |
UUGCCAUG | m7b | Disrupted | -0.113000 | no TS |
0.450000 |
|
hsa-miR-4716-5p |
gctACATGGAagactataa |
0 | UCCAUGUU | m7a | (m6a->m7a) | no TS | 0.011000 | No effect | |
hsa-miR-4727-5p |
gctacaTGGCAGActataa |
7 |
AUCUGCCA | m7b | Disrupted | -0.104000 | no TS |
2.240000 |
|
hsa-miR-4769-3p |
gctacATGGCAGActataa |
5 |
UCUGCCAU | m8a | Disrupted | -0.061000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105082164T>C | COSN7592667 | 8012342 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-324-5p |
ccttGGATGCatttttgca |
0 | CGCAUCCC | m6b | Created | no TS | -0.082000 |
-1.050000 |
|
hsa-miR-5700 |
ccttggATGCATTtttgca |
3 |
UAAUGCAU | m7b | Created | 0.076000 | 0.137000 |
0.040000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105082320T>G | COSN9963178 | C0007T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-19a-3p |
cagttttatTTTGCACcag |
14 |
UGUGCAAA | m7b | (m7b->m6c) | -0.062000 | no TS |
0.620000 |
|
hsa-miR-19b-3p |
cagttttatTTTGCACcag |
14 |
UGUGCAAA | m7b | (m7b->m6c) | -0.062000 | no TS |
-0.530000 |
|
hsa-miR-4803 |
cagttTTATGTTgcaccag |
5 |
UAACAUAA | m7b | Created | -0.178000 | -0.081000 |
-0.040000 |
|
hsa-miR-548aw |
cagttttaTTTTGCACcag |
14 |
GUGCAAAA | m8a | Disrupted | 0.034000 | -0.008000 |
0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105082460A>G | COSN8493392 | 381_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3129-3p |
ttaaagTTAGTTTaaatta |
9 |
AAACUAAU | m7a | Created | 0.119000 | 0.119000 |
-0.040000 |
|
hsa-miR-4637 |
ttaaAGTTAGTttaaatta |
0 | UACUAACU | m7b | Created | no TS | -0.166000 |
-2.180000 |
|
hsa-miR-5583-5p |
ttaaagTTAGTTTaaatta |
9 |
AAACUAAU | m7a | Created | 0.119000 | 0.119000 |
-3.120000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105082943G>T | COSN9289105 | AOCS-084-1-X | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.105083063C>T | COSN9289106 | AOCS-133-1-9 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-let-7d-5p |
ttagatTACCTCattgtcc |
11 |
AGAGGUAG | m6b | Disrupted | -0.985000 | -0.837000 |
0.180000 |
|
hsa-miR-202-3p |
ttagatTACCTCattgtcc |
11 |
AGAGGUAU | m6b | Disrupted | -0.332000 | -0.169000 |
2.740000 |
|
hsa-miR-4458 |
ttagatTACCTCattgtcc |
11 |
AGAGGUAG | m6b | Disrupted | -0.842000 | -0.687000 |
0.040000 |
|
hsa-miR-548ao-5p |
ttagaTTACTTCattgtcc |
13 |
AGAAGUAA | m7b | Created | -0.030000 | -0.282000 |
-0.200000 |
|
hsa-miR-548ax |
ttagaTTACTTCattgtcc |
13 |
AGAAGUAA | m7b | Created | -0.030000 | -0.271000 |
-1.410000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.105083081T>A | COSN7592668 | 8061178 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-592 |
catttTGACACAtgttgtt |
2 |
UUGUGUCA | m7b | Created | -0.043000 | -0.292000 |
-3.060000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
105079290 | rs150421099 | T | T |
hsa-miR-362-5p hsa-miR-500b-5p hsa-miR-501-5p hsa-miR-548ao-5p hsa-miR-548ax hsa-miR-5585-5p |
11 11 11 17 17 17 |
aAAGGATActtca aAAGGATActtca AAAGGATActtca aaaggaTACTTCA aaaggaTACTTCA aaaggaTACTTCA |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.024 -0.024 -0.071 -0.03 -0.03 -0.023 |
C |
hsa-miR-3616-5p hsa-miR-4795-5p hsa-miR-573 |
15 17 17 |
aaaggaCACTTCA aaaggaCACTTCA aaaggaCACTTCA |
Created Created Created |
N N N |
-0.096 -0.031 -0.087 |
|||
105079353 | rs183025644 | C | C |
hsa-miR-10a-3p hsa-miR-425-3p hsa-miR-6746-5p hsa-miR-6771-5p hsa-miR-6878-5p |
5 4 4 4 9 |
ttctccCGAATTT ttcTCCCGAAttt tTCTCCCGAattt ttCTCCCGAAttt TTCTCCCgaattt |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
0.042 -0.229 -0.421 -0.476 -0.109 |
T |
hsa-miR-4433-3p hsa-miR-4459 hsa-miR-4768-3p hsa-miR-506-5p |
4 4 4 4 |
ttCTCCTGAattt ttCTCCTGAattt tTCTCCTGAattt ttctCCTGAATtt |
Created Created Created Created |
N N N N |
-0.099 -0.09 -0.25 -0.117 |
|||
105081662 | rs191808032 | A | A |
hsa-miR-371b-3p hsa-miR-4641 |
10 13 |
atGGGCACTgttc ATGGGCActgttc |
Disrupted Disrupted |
N N |
-0.175 -0.07 |
C |
hsa-miR-3918 hsa-miR-7160-3p |
3 10 |
atgGGCCCTGttc atGGGCCCTgttc |
Created Created |
N N |
-0.117 -0.233 |
|||
105082255 | rs55848449 | C | |||||||
T |
hsa-miR-3143 hsa-miR-4803 hsa-miR-543 |
3 6 3 |
aAATGTTAtgtta aaatgTTATGTTA aAATGTTAtgtta |
Created Created Created |
N N N |
0.033 0.088 0.084 |