| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_005560 |
|---|---|
| Gene Symbol: | LAMA5 |
| Description: | Homo sapiens laminin, alpha 5 (LAMA5), mRNA. |
| Gene Location: | chr20(-):60884120-60942368 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.62309148C>T | COSN10019733 | C0028T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3190-3p |
tatttggccCTTCCACcca |
0 | UGUGGAAG | m7b | (m7b->m6b) | -0.153000 | no TS |
3.850000 |
| hsa-miR-3202 |
tatttggCCCTTCCAccca |
0 | UGGAAGGG | m8a | Disrupted | -0.359000 | no TS |
3.840000 |
| hsa-miR-3978 |
tatttggcCTTTCCACcca |
0 | GUGGAAAG | m8a | Created | no TS | -0.098000 |
-4.890000 |
| hsa-miR-4753-5p |
tattTGGCCTTtccaccca |
0 | CAAGGCCA | m7b | Created | no TS | -0.292000 |
-0.760000 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr20:g.62309152G>T | COSN10019734 | C0028T | [kidney][NS][other][neoplasm] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3926 |
tttataTTTGGCCcttcca |
1 |
UGGCCAAA | m7b | Disrupted | -0.262000 | no TS |
11.020000 |