SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_005559
Gene Symbol: LAMA1
Description: Homo sapiens laminin, alpha 1 (LAMA1), mRNA.
Gene Location: chr18(-):6941742-7117813
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr18:g.6941804T>C COSN5848220 HCC162 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3662 acttgatagCATTTTatgt
 2
 GAAAAUGA m6b Created -0.101000 -0.108000 0.470000
hsa-miR-3662 acttgatagCATTTTatgt
 2
 GAAAAUGA m6b Created -0.101000 -0.108000 0.470000


Mutation Mutation ID Sample Name Cancer Type
chr18:g.6941850A>T COSN6551369 ICGC_MB66 [central_nervous_system][brain][primitive_neuroectodermal_tumour-medulloblastoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr18:g.6941942G>A COSN7349332 8035591 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-30a-5p tgTGTTTACAttacactaa
 1
 UGUAAACA m8a (m7b->m8a) -0.082000 -0.202000 0.370000
hsa-miR-30b-5p tgTGTTTACAttacactaa
 1
 UGUAAACA m8a (m7b->m8a) -0.110000 -0.233000 0.370000
hsa-miR-30c-5p tgTGTTTACAttacactaa
 1
 UGUAAACA m8a (m7b->m8a) -0.110000 -0.233000 0.370000
hsa-miR-30d-5p tgTGTTTACAttacactaa
 1
 UGUAAACA m8a (m7b->m8a) -0.082000 -0.202000 0.370000
hsa-miR-30e-5p tgTGTTTACAttacactaa
 1
 UGUAAACA m8a (m7b->m8a) -0.082000 -0.202000 0.370000
hsa-miR-4495 tgtgTTTACATTacactaa
 0 AAUGUAAA m8a Created no TS -0.031000 0.300000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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