SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001146695
Gene Symbol: KDM4C
Description: Homo sapiens lysine (K)-specific demethylase 4C (KDM4C), transcript variant 2, mRNA.
Gene Location: chr9(+):6757640-7077264
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.7076586G>A COSN14756637 CHC205T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1322 gccaGCATCATgtttagga
 0 GAUGAUGC m7b Created no TS -0.177000 -0.490000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table
Location SNP ID Ancestral
Allele		 Allele miR ID Conservation miRSite FuncClass Validation context+
score change
7076586 rs1570513 A
A hsa-miR-1322
1
 aGCATCATgttta
 Disrupted
N
 -0.177

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