SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_175913
Gene Symbol: JPH2
Description: Homo sapiens junctophilin 2 (JPH2), transcript variant 1, mRNA.
Gene Location: chr20(-):42805456-42816218
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr20:g.44177090G>A COSN15288136 LP6005500-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5571-5p ctgatGAGAATTGcctggc
 0 CAAUUCUC m8a Created no TS -0.036000 -1.550000

Mutation Mutation ID Sample Name Cancer Type
chr20:g.44177494A>T COSN8995361 8051709 [pancreas][NS][carcinoid-endocrine_tumour][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-548u gaccgtattAGTCTTTcct
 5
 CAAAGACU m7b (m7b->m6b) -0.055000 no TS 2.950000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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