SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_002207
Gene Symbol: ITGA9
Description: Homo sapiens integrin, alpha 9 (ITGA9), mRNA.
Gene Location: chr3(+):37493812-37861281
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.37819056T>C COSN6767333 RK196_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5583-3p ttCCATATTCggaagaaaa
 16
 GAAUAUGG m8a (m7a->m8a) -0.163000 -0.136000 -1.610000

Mutation Mutation ID Sample Name Cancer Type
chr3:g.37819558T>G COSN8925474 SS6003109 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1280 catataaaCGGTGGGtgtg
 0 UCCCACCG m7b Created no TS -0.290000 -11.980000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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