SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_006948 |
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Gene Symbol: | HSPA13 |
Description: | Homo sapiens heat shock protein 70kDa family, member 13 (HSPA13), mRNA. |
Gene Location: | chr21(-):15743436-15755509 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr21:g.14371710C>T | 0_591 | Melanoma | |||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-191-5p |
ctcttaaTCCGTTaatgct |
0 | CAACGGAA | m6b | Disrupted | -0.338 | -0.171 |
0.06 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr21:g.14371860A>G | COSN5978777 | RK186_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5683 |
taaATCTGTAatagatttt |
0 | UACAGAUG | m7a | (m7a->m6b) | -0.057000 | no TS | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr21:g.14372040A>G | COSN5448516 | RK164_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-200c-5p |
tgctgtTAAGACacaaatt |
0 | CGUCUUAC | m6b | Created | no TS | -0.035000 |
-6.170000 |
|
hsa-miR-302c-5p |
tgcTGTTAAAacacaaatt |
5 |
UUUAACAU | m7a | (m7a->m6b) | 0.051000 | no TS |
0.260000 |
|
hsa-miR-4711-3p |
tgctgttAAGACACaaatt |
0 | CGUGUCUU | m7b | Created | no TS | -0.183000 |
-0.380000 |
|
hsa-miR-511 |
tgctgttAAGACACaaatt |
0 | GUGUCUUU | m7a | Created | NA | NA |
-0.300000 |
|
hsa-miR-592 |
tgctgttaaGACACAAatt |
0 | UUGUGUCA | m7a | (m6a->m7a) | no TS | -0.096000 |
-0.520000 |
|
hsa-miR-599 |
tgctgttaaGACACAAatt |
2 |
GUUGUGUC | m7b | (m6b->m7b) | -0.042000 | -0.197000 |
0.030000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr21:g.14372085T>C | COSN5448517 | RK164_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr21:g.14372255A>G | COSN1882060 | RK015_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4436a |
aaaaattaTGTCCTGatca |
0 | GCAGGACA | m7b | Created | -0.516000 | -0.731000 | No effect |
hsa-miR-5000-3p |
aaaaattaTGTCCTGAtca |
0 | UCAGGACA | m8a | Created | -0.545000 | -0.792000 |
-0.020000 |
hsa-miR-4436a |
aaaaattaTGTCCTGatca |
0 | GCAGGACA | m7b | Created | -0.516000 | -0.731000 | No effect |
hsa-miR-5000-3p |
aaaaattaTGTCCTGAtca |
0 | UCAGGACA | m8a | Created | -0.545000 | -0.792000 |
-0.020000 |
hsa-miR-4436a |
aaaaattaTGTCCTGatca |
0 | GCAGGACA | m7b | Created | -0.516 | -0.731 | No effect |
hsa-miR-5000-3p |
aaaaattaTGTCCTGAtca |
0 | UCAGGACA | m8a | Created | -0.545 | -0.792 |
-0.02 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
14371655 | rs67720834 | - | - |
hsa-miR-4436a hsa-miR-5000-3p |
1 1 |
caTGTCCTGAagt caTGTCCTGAagt |
Unknown Unknown |
N N |
-0.304 -0.314 |
C |
hsa-miR-211-3p hsa-miR-3127-5p hsa-miR-4270 hsa-miR-4441 hsa-miR-6754-5p hsa-miR-7845-5p |
1 1 1 1 1 1 |
catGTCCCTGAagt catgtCCCTGAAgt catgTCCCTGAagt catgTCCCTGAagt catgTCCCTGAagt caTGTCCCTgaagt |
Unknown Unknown Unknown Unknown Unknown Unknown |
N N N N N N |
-0.355 -0.114 -0.118 -0.122 -0.112 -0.182 |