SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_172002 |
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Gene Symbol: | HSCB |
Description: | Homo sapiens HscB iron-sulfur cluster co-chaperone homolog (E. coli) (HSCB), mRNA. |
Gene Location: | chr22(+):29138042-29153496 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
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chr22:g.28757266G>C | ICGC_B33B595E-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-640 |
tgggTGGATCAcaaggtca |
0 | AUGAUCCA | m7b | Created | no TS | -0.132 |
-6.66 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.28757325G>A | ICGC_397704 | TCGA-AA-3492-01A-01D-1408-10 | ColonAdenocarcinoma(TCGA,US) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-30a-3p |
ctctgCTGAAAatacaaaa |
0 | CUUUCAGU | m6b | Disrupted | -0.034 | -0.034 | No effect |
hsa-miR-30d-3p |
ctctgCTGAAAatacaaaa |
0 | CUUUCAGU | m6b | Disrupted | -0.034 | -0.034 | No effect |
hsa-miR-30e-3p |
ctctgCTGAAAatacaaaa |
0 | CUUUCAGU | m6b | Disrupted | -0.034 | -0.034 | No effect |
hsa-miR-4291 |
ctCTGCTGAAaatacaaaa |
0 | UUCAGCAG | m8a | (m8a->m7a) | -0.343 | -0.343 | No effect |