| SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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| RefSeq ID: | NM_000458 |
|---|---|
| Gene Symbol: | HNF1B |
| Description: | Homo sapiens HNF1 homeobox B (HNF1B), transcript variant 1, mRNA. |
| Gene Location: | chr17(-):36046433-36105096 |
| Browse Associations | |
| Browse Pathways | |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr17:g.37686980G>T | ICGC_ssm_v3_76010 | HCC137T | [liver][NS][carcinoma][NS] | |||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-148a-5p |
tattGAACTTagccaaaca |
0 | AAAGUUCU | m6b | Created | no TS | -0.035 |
-8.17 |
| hsa-miR-24-3p |
tattgaaCTGAGCCAaaca |
0 | UGGCUCAG | m8a | Disrupted | -0.399 | no TS |
7.56 |
| hsa-miR-4277 |
tattGAACTGagccaaaca |
0 | GCAGUUCU | m6b | Disrupted | -0.078 | no TS |
10.88 |
| hsa-miR-4284 |
tattgaacTGAGCCaaaca |
0 | GGGCUCAC | m6b | Disrupted | -0.14 | no TS |
0.47 |
| hsa-miR-5000-5p |
tatTGAACTGagccaaaca |
0 | CAGUUCAG | m7a | (m7a->m6b) | NA | NA |
1.98 |
| Mutation | Mutation ID | Sample Name | Cancer Type | |||||
|---|---|---|---|---|---|---|---|---|
| chr17:g.37687351C>T | cosmic_v64_1675361 | Melanoma | ||||||
| miRNA Targets Table | ||||||||
| miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
| hsa-miR-3973 |
cactTACTTTGTgcgcaac |
0 | ACAAAGUA | m8a | Created | no TS | -0.051 |
-0.99 |
| hsa-miR-548a-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.029 | No effect |
| hsa-miR-548ab |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548ak |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548am-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548ao-5p |
cacTTACTTCgtgcgcaac |
0 | AGAAGUAA | m7b | (m7b->m6c) | -0.063 | no TS | No effect |
| hsa-miR-548ap-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548aq-5p |
cacTTACTTTgtgcgcaac |
0 | GAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 |
0.27 |
| hsa-miR-548ar-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.029 | No effect |
| hsa-miR-548as-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.019 | No effect |
| hsa-miR-548au-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548ax |
cacTTACTTCgtgcgcaac |
0 | AGAAGUAA | m7b | (m7b->m6c) | -0.063 | no TS | No effect |
| hsa-miR-548b-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | -0.009 | No effect |
| hsa-miR-548c-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548d-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | -0.009 | No effect |
| hsa-miR-548h-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548i |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.029 | No effect |
| hsa-miR-548j |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548o-5p |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548w |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-548y |
cacTTACTTTgtgcgcaac |
0 | AAAAGUAA | m7b | (m6c->m7b) | no TS | 0.01 | No effect |
| hsa-miR-559 |
cacTTACTTTgtgcgcaac |
0 | UAAAGUAA | m7b | (m6c->m7b) | no TS | 0.038 | No effect |