SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_002116 |
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Gene Symbol: | HLA-A |
Description: | Homo sapiens major histocompatibility complex, class I, A (HLA-A), transcript variant 2, mRNA. |
Gene Location: | chr6(+):29910246-29913661 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.29945576T>C | COSN1330872 | HX16T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1271-3p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138000 |
-12.740000 |
hsa-miR-323a-3p |
gtgtaggcaTAATGTGagg |
0 | CACAUUAC | m7a | (m7a->m6b) | NA | NA |
-1.810000 |
hsa-miR-4289 |
gtgtaggCACAATGtgagg |
0 | GCAUUGUG | m7b | Created | no TS | -0.063000 |
-0.570000 |
hsa-miR-4633-5p |
gtgtAGGCATAatgtgagg |
2 |
AUAUGCCU | m7b | Disrupted | -0.313000 | no TS |
3.570000 |
hsa-miR-532-5p |
gtgtAGGCATaatgtgagg |
2 |
CAUGCCUU | m6b | Disrupted | -0.118000 | no TS |
8.140000 |
hsa-miR-550a-3-5p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138000 |
-2.900000 |
hsa-miR-550a-5p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138000 |
-4.150000 |
hsa-miR-550b-2-5p |
gtgtAGGCACAatgtgagg |
0 | AUGUGCCU | m7b | Created | no TS | -0.399000 |
-0.580000 |
hsa-miR-1271-3p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138 |
-12.74 |
hsa-miR-323a-3p |
gtgtaggcaTAATGTGagg |
0 | CACAUUAC | m7a | (m7a->m6b) | NA | NA |
-1.81 |
hsa-miR-4289 |
gtgtaggCACAATGtgagg |
0 | GCAUUGUG | m7b | Created | no TS | -0.063 |
-0.57 |
hsa-miR-4633-5p |
gtgtAGGCATAatgtgagg |
2 |
AUAUGCCU | m7b | Disrupted | -0.313 | no TS |
3.57 |
hsa-miR-532-5p |
gtgtAGGCATaatgtgagg |
2 |
CAUGCCUU | m6b | Disrupted | -0.118 | no TS |
8.14 |
hsa-miR-550a-3-5p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138 |
-2.9 |
hsa-miR-550a-5p |
gtgtAGGCACaatgtgagg |
0 | AGUGCCUG | m6b | Created | no TS | -0.138 |
-4.15 |
hsa-miR-550b-2-5p |
gtgtAGGCACAatgtgagg |
0 | AUGUGCCU | m7b | Created | no TS | -0.399 |
-0.58 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.29945578A>G | COSN1330873 | HX16T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-130a-5p |
gtaggcatAATGTGAggag |
5 |
UUCACAUU | m7b | Disrupted | -0.075000 | no TS |
3.530000 |
hsa-miR-23a-3p |
gtaggcatAATGTGAggag |
5 |
AUCACAUU | m7b | Disrupted | -0.038000 | no TS |
3.530000 |
hsa-miR-23b-3p |
gtaggcatAATGTGAggag |
5 |
AUCACAUU | m7b | Disrupted | -0.038000 | no TS |
3.520000 |
hsa-miR-23c |
gtaggcatAATGTGAggag |
5 |
AUCACAUU | m7b | Disrupted | -0.038000 | no TS |
3.520000 |
hsa-miR-323a-3p |
gtaggcaTAATGTGaggag |
0 | CACAUUAC | m7a | Disrupted | NA | NA |
-1.810000 |
hsa-miR-342-3p |
gtaggcataGTGTGAGgag |
0 | UCUCACAC | m7b | (m6c->m7b) | no TS | -0.144000 |
1.380000 |
hsa-miR-130a-5p |
gtaggcatAATGTGAggag |
0 | UUCACAUU | m7b | Disrupted | -0.075 | no TS |
3.53 |
hsa-miR-23a-3p |
gtaggcatAATGTGAggag |
0 | AUCACAUU | m7b | Disrupted | -0.038 | no TS |
3.53 |
hsa-miR-23b-3p |
gtaggcatAATGTGAggag |
0 | AUCACAUU | m7b | Disrupted | -0.038 | no TS |
3.52 |
hsa-miR-23c |
gtaggcatAATGTGAggag |
0 | AUCACAUU | m7b | Disrupted | -0.038 | no TS |
3.52 |
hsa-miR-323a-3p |
gtaggcaTAATGTGaggag |
0 | CACAUUAC | m7a | Disrupted | NA | NA |
-1.81 |
hsa-miR-342-3p |
gtaggcataGTGTGAGgag |
0 | UCUCACAC | m7b | (m6c->m7b) | no TS | -0.144 |
1.38 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.29945718G>A | COSN6513647 | BN37T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-767-5p |
caacttcATGGTGCActga |
2 |
UGCACCAU | m8a | Disrupted | -0.355000 | no TS |
4.080000 |