SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001135602
Gene Symbol: GLB1
Description: Homo sapiens galactosidase, beta 1 (GLB1), transcript variant 1, mRNA.
Gene Location: chr3(-):33038099-33138694
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.32996934A>C COSN1276086 BN40T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-5009-3p gaATTTAGGAtgtgcattt
 0 UCCUAAAU m8a (m8a->m7b) -0.240000 -0.112000 0.690000
hsa-miR-5009-3p gaATTTAGGAtgtgcattt
 0 UCCUAAAU m8a (m8a->m7b) -0.240000 -0.112000 0.690000
hsa-miR-5009-3p gaATTTAGGAtgtgcattt
 0 UCCUAAAU m8a (m8a->m7b) -0.24 -0.112 0.69

Mutation Mutation ID Sample Name Cancer Type
chr3:g.32997004T>C COSN15379815 0007_CRUK_PC_0007_T1_DNA [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-let-7d-5p ccctgaacaTACCTCacag
 7
 AGAGGUAG m6b Disrupted -0.122000 no TS 6.060000
hsa-miR-124-5p cccTGAACACacctcacag
 0 CGUGUUCA m7b (m6c->m7b) no TS -0.241000 -2.130000
hsa-miR-202-3p ccctgaacATACCTCacag
 6
 AGAGGUAU m7b Disrupted -0.310000 no TS 10.340000
hsa-miR-3650 ccctgaACACACCTcacag
 0 AGGUGUGU m8a Created no TS -0.232000 -1.140000
hsa-miR-4458 ccctgaacaTACCTCacag
 7
 AGAGGUAG m6b Disrupted -0.125000 no TS 2.880000
hsa-miR-567 ccctgAACATACctcacag
 1
 AGUAUGUU m7b Disrupted -0.090000 no TS 3.860000
hsa-let-7d-5p ccctgaacaTACCTCacag
 7
 AGAGGUAG m6b Disrupted -0.122000 no TS 6.060000
hsa-miR-124-5p cccTGAACACacctcacag
 0 CGUGUUCA m7b (m6c->m7b) no TS -0.241000 -2.130000
hsa-miR-202-3p ccctgaacATACCTCacag
 6
 AGAGGUAU m7b Disrupted -0.310000 no TS 10.340000
hsa-miR-3650 ccctgaACACACCTcacag
 0 AGGUGUGU m8a Created no TS -0.232000 -1.140000
hsa-miR-4458 ccctgaacaTACCTCacag
 7
 AGAGGUAG m6b Disrupted -0.125000 no TS 2.880000
hsa-miR-567 ccctgAACATACctcacag
 1
 AGUAUGUU m7b Disrupted -0.090000 no TS 3.860000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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