SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_000158
Gene Symbol: GBE1
Description: Homo sapiens glucan (1,4-alpha-), branching enzyme 1 (GBE1), mRNA.
Gene Location: chr3(-):81538849-81810950
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.81489708G>A COSN4821082 tumor_4170686 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3163 aaagcTTTTATAaaattgc
 0 UAUAAAAU m7a Created no TS 0.036000 -0.520000
hsa-miR-340-5p aaagctTTTATAAaattgc
 0 UUAUAAAG m7a Created no TS 0.012000 -0.800000
hsa-miR-520d-5p aaagctTTTGTAaaattgc
 0 CUACAAAG m6b Disrupted -0.024000 no TS 4.700000
hsa-miR-524-5p aaagctTTTGTAaaattgc
 0 CUACAAAG m6b Disrupted -0.024000 no TS 4.710000


Mutation Mutation ID Sample Name Cancer Type
chr3:g.81490099C>T cosmic_v64_1751958 ccRCC
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.81490182A>G COSN1965743 RK108_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-208a tttcaagtCGTCTTAgcag
 0 AUAAGACG m7b Created no TS -0.195000 -2.422000
hsa-miR-208b tttcaagtCGTCTTAgcag
 0 AUAAGACG m7b Created no TS -0.185000 -4.780000
hsa-miR-4426 tttcaagtCATCTTagcag
 2
 GAAGAUGG m6b Disrupted -0.043000 no TS No effect
hsa-miR-4647 tttcaagtCATCTTagcag
 2
 GAAGAUGG m6b Disrupted -0.037000 no TS 0.040000
hsa-miR-4662b tttcaagtCATCTTagcag
 2
 AAAGAUGG m6b Disrupted -0.043000 no TS No effect
hsa-miR-208a tttcaagtCGTCTTAgcag
 0 AUAAGACG m7b Created no TS -0.195 -2.422
hsa-miR-208b tttcaagtCGTCTTAgcag
 0 AUAAGACG m7b Created no TS -0.185 -4.78
hsa-miR-4426 tttcaagtCATCTTagcag
 0 GAAGAUGG m6b Disrupted -0.043 no TS No effect
hsa-miR-4647 tttcaagtCATCTTagcag
 0 GAAGAUGG m6b Disrupted -0.037 no TS 0.04
hsa-miR-4662b tttcaagtCATCTTagcag
 0 AAAGAUGG m6b Disrupted -0.043 no TS No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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