SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_001002295
Gene Symbol:	GATA3
Description:	Homo sapiens GATA binding protein 3 (GATA3), transcript variant 1, mRNA.
Gene Location:	chr10(+):8096666-8117164
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr10:g.8074597C>A			COSN1123049		HX12T		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4774-5p	aggaaATACCAGttctggg	0	UCUGGUAU	m7b	Disrupted	-0.118000	no TS	9.150000
hsa-miR-5681b	aggaAATACCagttctggg	0	AGGUAUUG	m6b	Disrupted	-0.025000	no TS	0.390000
hsa-miR-582-3p	aggaaatACCAGTTctggg	2	UAACUGGU	m7b	Disrupted	-0.166000	-0.057000	-0.120000
hsa-miR-643	aggaaATACAAGTtctggg	0	ACUUGUAU	m8a	Created	no TS	-0.079000	-1.580000
hsa-miR-4774-5p	aggaaATACCAGttctggg	0	UCUGGUAU	m7b	Disrupted	-0.118	no TS	9.15
hsa-miR-5681b	aggaAATACCagttctggg	0	AGGUAUUG	m6b	Disrupted	-0.025	no TS	0.39
hsa-miR-582-3p	aggaaatACCAGTTctggg	0	UAACUGGU	m7b	Disrupted	-0.166	-0.057	-0.12
hsa-miR-643	aggaaATACAAGTtctggg	0	ACUUGUAU	m8a	Created	no TS	-0.079	-1.58

Mutation			Mutation ID		Sample Name		Cancer Type
chr10:g.8075014G>A			COSN8721903		AOCS-055-1-7		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-5682	gcctGTGCTAagggtagca	0	GUAGCACC	m6b	Created	no TS	-0.114000	-14.750000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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