SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000150 |
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Gene Symbol: | FUT6 |
Description: | Homo sapiens fucosyltransferase 6 (alpha (1,3) fucosyltransferase) (FUT6), transcript variant 1, mRNA. |
Gene Location: | chr19(-):5830636-5839742 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr19:g.5830856C>A | COSN7451094 | 8016470 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2682-3p |
ttgggaggcAGAGGCaggc |
0 | CGCCUCUU | m6b | Created | no TS | -0.094000 |
-0.030000 |
|
hsa-miR-5001-3p |
ttgggAGGCAGAggcaggc |
0 | UUCUGCCU | m7b | Created | no TS | -0.077000 |
-2.930000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr19:g.5831249G>T | COSN7451095 | 8069329 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1911-3p |
cttaCCTGGTatttcacat |
0 | CACCAGGC | m6b | Created | no TS | -0.158000 | No effect | |
hsa-miR-1915-3p |
cttaCCTGGGatttcacat |
2 |
CCCCAGGG | m6b | Disrupted | -0.501000 | -0.358000 |
0.020000 |
|
hsa-miR-4726-3p |
cttACCTGGGatttcacat |
2 |
ACCCAGGU | m7b | (m7b->m6c) | -0.750000 | -0.374000 |
0.460000 |
|
hsa-miR-605 |
cttacctGGGATTTcacat |
2 |
UAAAUCCC | m7b | Disrupted | -0.098000 | no TS |
2.530000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.5831385C>G | COSN519066 | TCGA-61-1906-01 | [ovary][NS][carcinoma][serous_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-125a-3p |
aagctTCACCTGcctgagg |
2 |
ACAGGUGA | m7b | Disrupted | -0.892000 | -0.729000 | No effect |
hsa-miR-2682-5p |
aagcttcacCTGCCTGagg |
0 | CAGGCAGU | m7a | (m7a->m6a) | NA | NA |
0.950000 |
hsa-miR-3622a-5p |
aagcttcaCGTGCCTGagg |
0 | CAGGCACG | m8a | Created | no TS | -0.270000 |
-19.910000 |
hsa-miR-3665 |
aagcttCACCTGCctgagg |
2 |
AGCAGGUG | m7b | Disrupted | -1.045000 | -0.825000 |
0.220000 |
hsa-miR-4269 |
aagcttcacGTGCCTGagg |
0 | GCAGGCAC | m7b | (m6b->m7b) | -0.249000 | -0.480000 |
0.410000 |
hsa-miR-4514 |
aagcttcacCTGCCTGagg |
1 |
ACAGGCAG | m7b | (m7b->m6b) | -0.613000 | -0.415000 |
2.230000 |
hsa-miR-4692 |
aagcttcacCTGCCTGAgg |
1 |
UCAGGCAG | m8a | (m8a->m7a) | -0.639000 | -0.434000 |
1.370000 |
hsa-miR-4736 |
aagcttcACCTGCCTgagg |
2 |
AGGCAGGU | m8a | Disrupted | -0.496000 | -0.316000 |
1.230000 |
hsa-miR-940 |
aagcttcaCCTGCCTgagg |
2 |
AAGGCAGG | m7b | Disrupted | -0.506000 | -0.312000 |
2.390000 |
hsa-miR-125a-3p |
aagctTCACCTGcctgagg |
2 |
ACAGGUGA | m7b | Disrupted | -0.892000 | -0.729000 | No effect |
hsa-miR-2682-5p |
aagcttcacCTGCCTGagg |
0 | CAGGCAGU | m7a | (m7a->m6a) | NA | NA |
0.950000 |
hsa-miR-3622a-5p |
aagcttcaCGTGCCTGagg |
0 | CAGGCACG | m8a | Created | no TS | -0.270000 |
-19.910000 |
hsa-miR-3665 |
aagcttCACCTGCctgagg |
2 |
AGCAGGUG | m7b | Disrupted | -1.045000 | -0.825000 |
0.220000 |
hsa-miR-4269 |
aagcttcacGTGCCTGagg |
0 | GCAGGCAC | m7b | (m6b->m7b) | -0.249000 | -0.480000 |
0.410000 |
hsa-miR-4514 |
aagcttcacCTGCCTGagg |
1 |
ACAGGCAG | m7b | (m7b->m6b) | -0.613000 | -0.415000 |
2.230000 |
hsa-miR-4692 |
aagcttcacCTGCCTGAgg |
1 |
UCAGGCAG | m8a | (m8a->m7a) | -0.639000 | -0.434000 |
1.370000 |
hsa-miR-4736 |
aagcttcACCTGCCTgagg |
2 |
AGGCAGGU | m8a | Disrupted | -0.496000 | -0.316000 |
1.230000 |
hsa-miR-940 |
aagcttcaCCTGCCTgagg |
2 |
AAGGCAGG | m7b | Disrupted | -0.506000 | -0.312000 |
2.390000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
5831066 | rs34079155 | - | C |
hsa-miR-4685-5p hsa-miR-6837-5p hsa-miR-7113-5p |
2 2 2 |
ctcaCCCTGGAgg ctcaCCCTGGAgg ctcaCCCTGGAgg |
Unknown Unknown Unknown |
N N N |
-0.07 -0.073 -0.072 |
- |
hsa-miR-125a-3p |
2 |
cTCACCTGgagg |
Unknown |
N |
-0.012 |
|||
5831096 | rs186655016 | C | C |
hsa-miR-3665 hsa-miR-4690-5p hsa-miR-6165 hsa-miR-6510-5p |
3 4 4 4 |
CACCTGCtaggag caCCTGCTAggag caCCTGCTAggag caCCTGCTAggag |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
-0.154 -0.086 -0.083 -0.086 |
G |
hsa-miR-1911-3p hsa-miR-6753-5p |
3 4 |
caCCTGGTAggag caCCTGGTAggag |
Created Created |
N N |
-0.099 -0.103 |