SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000150
Gene Symbol: FUT6
Description: Homo sapiens fucosyltransferase 6 (alpha (1,3) fucosyltransferase) (FUT6), transcript variant 1, mRNA.
Gene Location: chr19(-):5830636-5839742
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr19:g.5830856C>A COSN7451094 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-2682-3p ttgggaggcAGAGGCaggc
0 CGCCUCUU m6b Created no TS -0.094000 -0.030000
hsa-miR-5001-3p ttgggAGGCAGAggcaggc
0 UUCUGCCU m7b Created no TS -0.077000 -2.930000

Mutation Mutation ID Sample Name Cancer Type
chr19:g.5831249G>T COSN7451095 8069329 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1911-3p cttaCCTGGTatttcacat
0 CACCAGGC m6b Created no TS -0.158000 No effect
hsa-miR-1915-3p cttaCCTGGGatttcacat
2
CCCCAGGG m6b Disrupted -0.501000 -0.358000 0.020000
hsa-miR-4726-3p cttACCTGGGatttcacat
2
ACCCAGGU m7b (m7b->m6c) -0.750000 -0.374000 0.460000
hsa-miR-605 cttacctGGGATTTcacat
2
UAAAUCCC m7b Disrupted -0.098000 no TS 2.530000

Mutation Mutation ID Sample Name Cancer Type
chr19:g.5831385C>G COSN519066 TCGA-61-1906-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-125a-3p aagctTCACCTGcctgagg
2
ACAGGUGA m7b Disrupted -0.892000 -0.729000 No effect
hsa-miR-2682-5p aagcttcacCTGCCTGagg
0 CAGGCAGU m7a (m7a->m6a) NA NA 0.950000
hsa-miR-3622a-5p aagcttcaCGTGCCTGagg
0 CAGGCACG m8a Created no TS -0.270000 -19.910000
hsa-miR-3665 aagcttCACCTGCctgagg
2
AGCAGGUG m7b Disrupted -1.045000 -0.825000 0.220000
hsa-miR-4269 aagcttcacGTGCCTGagg
0 GCAGGCAC m7b (m6b->m7b) -0.249000 -0.480000 0.410000
hsa-miR-4514 aagcttcacCTGCCTGagg
1
ACAGGCAG m7b (m7b->m6b) -0.613000 -0.415000 2.230000
hsa-miR-4692 aagcttcacCTGCCTGAgg
1
UCAGGCAG m8a (m8a->m7a) -0.639000 -0.434000 1.370000
hsa-miR-4736 aagcttcACCTGCCTgagg
2
AGGCAGGU m8a Disrupted -0.496000 -0.316000 1.230000
hsa-miR-940 aagcttcaCCTGCCTgagg
2
AAGGCAGG m7b Disrupted -0.506000 -0.312000 2.390000
hsa-miR-125a-3p aagctTCACCTGcctgagg
2
ACAGGUGA m7b Disrupted -0.892000 -0.729000 No effect
hsa-miR-2682-5p aagcttcacCTGCCTGagg
0 CAGGCAGU m7a (m7a->m6a) NA NA 0.950000
hsa-miR-3622a-5p aagcttcaCGTGCCTGagg
0 CAGGCACG m8a Created no TS -0.270000 -19.910000
hsa-miR-3665 aagcttCACCTGCctgagg
2
AGCAGGUG m7b Disrupted -1.045000 -0.825000 0.220000
hsa-miR-4269 aagcttcacGTGCCTGagg
0 GCAGGCAC m7b (m6b->m7b) -0.249000 -0.480000 0.410000
hsa-miR-4514 aagcttcacCTGCCTGagg
1
ACAGGCAG m7b (m7b->m6b) -0.613000 -0.415000 2.230000
hsa-miR-4692 aagcttcacCTGCCTGAgg
1
UCAGGCAG m8a (m8a->m7a) -0.639000 -0.434000 1.370000
hsa-miR-4736 aagcttcACCTGCCTgagg
2
AGGCAGGU m8a Disrupted -0.496000 -0.316000 1.230000
hsa-miR-940 aagcttcaCCTGCCTgagg
2
AAGGCAGG m7b Disrupted -0.506000 -0.312000 2.390000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Germline mutations in target sites of miRNAs in somatic mutation table

Location SNP ID Ancestral
Allele
Allele miR ID Conservation miRSite FuncClass Validation context+
score change
5831066 rs34079155 - C hsa-miR-4685-5p
hsa-miR-6837-5p
hsa-miR-7113-5p
2
2
2
ctcaCCCTGGAgg
ctcaCCCTGGAgg
ctcaCCCTGGAgg
Unknown
Unknown
Unknown
N
N
N
-0.07
-0.073
-0.072
- hsa-miR-125a-3p
2
cTCACCTGgagg
Unknown
N
-0.012
5831096 rs186655016 C C hsa-miR-3665
hsa-miR-4690-5p
hsa-miR-6165
hsa-miR-6510-5p
3
4
4
4
CACCTGCtaggag
caCCTGCTAggag
caCCTGCTAggag
caCCTGCTAggag
Disrupted
Disrupted
Disrupted
Disrupted
N
N
N
N
-0.154
-0.086
-0.083
-0.086
G hsa-miR-1911-3p
hsa-miR-6753-5p
3
4
caCCTGGTAggag
caCCTGGTAggag
Created
Created
N
N
-0.099
-0.103

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