SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000148 |
---|---|
Gene Symbol: | FUT1 |
Description: | Homo sapiens fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, H blood group) (FUT1), mRNA. |
Gene Location: | chr19(-):49251267-49258647 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48748776C>T | COSN8754051 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1273f |
aaaCCATCTCtagttggcc |
1 |
GGAGAUGG | m7b | (m7b->m6c) | -0.144000 | no TS | No effect |
hsa-miR-4426 |
aaaCCATCTTtagttggcc |
0 | GAAGAUGG | m7b | (m6c->m7b) | no TS | -0.116000 |
-0.040000 |
hsa-miR-4647 |
aaaCCATCTTtagttggcc |
0 | GAAGAUGG | m7b | (m6c->m7b) | no TS | -0.116000 |
-0.010000 |
hsa-miR-4662b |
aaaCCATCTTTagttggcc |
0 | AAAGAUGG | m8a | Created | no TS | -0.116000 | No effect |
hsa-miR-4708-5p |
aaacCATCTCTagttggcc |
0 | AGAGAUGC | m7a | Disrupted | NA | NA | No effect |
hsa-miR-4744 |
aaaccaTCTTTAGttggcc |
0 | UCUAAAGA | m7b | Created | no TS | -0.015000 | No effect |
hsa-miR-708-3p |
aaaccatcTCTAGTTGgcc |
5 |
CAACUAGA | m8a | Disrupted | -0.069000 | -0.097000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48748795G>T | 13_124 | SJMB016_D | Medulloblastoma | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48749061C>G | COSN15558545 | AOCS-137-1-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-541-3p |
tctGCCCACCtcggcctcc |
2 |
UGGUGGGC | m7b | (m7b->m6c) | -0.334000 | -0.231000 |
1.060000 |
hsa-miR-654-5p |
tctGCCCACCtcggcctcc |
2 |
UGGUGGGC | m7b | (m7b->m6c) | -0.287000 | -0.194000 |
1.060000 |
hsa-miR-541-3p |
tctGCCCACCtcggcctcc |
2 |
UGGUGGGC | m7b | (m7b->m6c) | -0.334000 | -0.231000 |
1.060000 |
hsa-miR-654-5p |
tctGCCCACCtcggcctcc |
2 |
UGGUGGGC | m7b | (m7b->m6c) | -0.287000 | -0.194000 |
1.060000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48749357T>A | ICGC_D504397A-2A78-11E2-951E-21FD496BB9B8 | CPCG_0103_Pr_P_P5 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-532-5p |
tgggattacAGGCATGagc |
0 | CAUGCCUU | m7a | (m6a->m7a) | NA | NA |
-0.02 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48749887G>C | COSN8974474 | AOCS-155-3-5 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1343 |
tgccCCCAGGAatggggaa |
2 |
CUCCUGGG | m7b | Disrupted | -0.281000 | no TS |
1.550000 |
hsa-miR-4731-5p |
tgcCCCCAGCAatggggaa |
0 | UGCUGGGG | m8a | Created | no TS | -0.354000 |
-1.680000 |
hsa-miR-5589-5p |
tgccCCCAGCaatggggaa |
4 |
GGCUGGGU | m6b | Created | -0.115000 | -0.238000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr19:g.48750025A>G | COSN8261410 | PCSI_0083_Pa_P_526 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |