SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_004473 |
---|---|
Gene Symbol: | FOXE1 |
Description: | Homo sapiens forkhead box E1 (thyroid transcription factor 2) (FOXE1), mRNA. |
Gene Location: | chr9(+):100615536-100618997 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.97855197G>T | COSN14724833 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4672 |
taggcaccCTGTGTActct |
0 | UUACACAG | m7b | Created | no TS | -0.024000 |
-2.240000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.97855394C>T | COSN8519684 | 3676_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3929 |
cagttTCAGCCTtccatgt |
1 |
GAGGCUGA | m7b | Disrupted | -0.331000 | -0.171000 | No effect | |
hsa-miR-4419b |
cagttTCAGCCTtccatgt |
1 |
GAGGCUGA | m7b | Disrupted | -0.350000 | -0.171000 | No effect | |
hsa-miR-4478 |
cagttTCAGCCTtccatgt |
1 |
GAGGCUGA | m7b | Disrupted | -0.323000 | -0.153000 | No effect | |
hsa-miR-4499 |
cagttTCAGTCTTccatgt |
4 |
AAGACUGA | m8a | Created | -0.063000 | -0.200000 | No effect | |
hsa-miR-7-5p |
cagtttcaGTCTTCCAtgt |
7 |
UGGAAGAC | m8a | Created | 0.011000 | -0.309000 |
-3.710000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.97855644A>G | COSN6371893 | RK205_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3199 |
cagcactcCAGTCCCatca |
0 | AGGGACUG | m7b | Disrupted | -0.337000 | -0.088000 |
-0.450000 |
|
hsa-miR-3649 |
cagcactccGGTCCCatca |
0 | AGGGACCU | m6b | Created | no TS | -0.149000 |
-5.930000 |
|
hsa-miR-365a-5p |
cagcactccAGTCCCatca |
2 |
AGGGACUU | m6b | Disrupted | -0.292000 | -0.197000 |
0.110000 |
|
hsa-miR-365b-5p |
cagcactccAGTCCCatca |
2 |
AGGGACUU | m6b | Disrupted | -0.292000 | -0.197000 |
0.030000 |
|
hsa-miR-4515 |
cagcactCCAGTCCcatca |
4 |
AGGACUGG | m7b | Disrupted | -0.327000 | -0.170000 |
0.850000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.97855661C>T | COSN5240529 | SS6003308 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4766-5p |
cacctgaaCTTTCAGtctc |
6 |
UCUGAAAG | m7b | Created | -0.299000 | -0.316000 |
-2.400000 |
|
hsa-miR-5000-5p |
cacCTGAACTttcagtctc |
2 |
CAGUUCAG | m7b | (m6b->m7b) | -0.018000 | -0.063000 | No effect | |
hsa-miR-4766-5p |
cacctgaaCTTTCAGtctc |
6 |
UCUGAAAG | m7b | Created | -0.299000 | -0.316000 |
-2.400000 |
|
hsa-miR-5000-5p |
cacCTGAACTttcagtctc |
2 |
CAGUUCAG | m7b | (m6b->m7b) | -0.018000 | -0.063000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.97855675A>T | COSN15434701 | AOCS-150-8-X | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1275 |
gtcTCCCCCAtctgttaca |
2 |
GUGGGGGA | m7b | (m7b->m6b) | -0.321000 | -0.163000 |
0.200000 |
hsa-miR-3154 |
gtctccCCCTTCTGttaca |
0 | CAGAAGGG | m8a | Created | no TS | -0.054000 |
-0.600000 |
hsa-miR-3179 |
gtctcCCCCTTCTgttaca |
0 | AGAAGGGG | m8a | Created | no TS | -0.094000 |
-0.250000 |
hsa-miR-4665-5p |
gtcTCCCCCAtctgttaca |
2 |
CUGGGGGA | m7b | (m7b->m6b) | -0.321000 | -0.163000 |
0.120000 |
hsa-miR-4716-3p |
gtcTCCCCCTTctgttaca |
3 |
AAGGGGGA | m8a | Created | -0.238000 | -0.397000 |
-0.910000 |
hsa-miR-4723-5p |
gtCTCCCCCAtctgttaca |
2 |
UGGGGGAG | m8a | (m8a->m7a) | -1.006000 | -0.857000 |
0.070000 |
hsa-miR-5683 |
gtctccccCATCTGTtaca |
2 |
UACAGAUG | m7b | Disrupted | -0.001000 | no TS |
0.260000 |
hsa-miR-5698 |
gtCTCCCCCAtctgttaca |
2 |
UGGGGGAG | m8a | (m8a->m7a) | -0.995000 | -0.846000 |
0.500000 |
hsa-miR-1275 |
gtcTCCCCCAtctgttaca |
2 |
GUGGGGGA | m7b | (m7b->m6b) | -0.321000 | -0.163000 |
0.200000 |
hsa-miR-3154 |
gtctccCCCTTCTGttaca |
0 | CAGAAGGG | m8a | Created | no TS | -0.054000 |
-0.600000 |
hsa-miR-3179 |
gtctcCCCCTTCTgttaca |
0 | AGAAGGGG | m8a | Created | no TS | -0.094000 |
-0.250000 |
hsa-miR-4665-5p |
gtcTCCCCCAtctgttaca |
2 |
CUGGGGGA | m7b | (m7b->m6b) | -0.321000 | -0.163000 |
0.120000 |
hsa-miR-4716-3p |
gtcTCCCCCTTctgttaca |
3 |
AAGGGGGA | m8a | Created | -0.238000 | -0.397000 |
-0.910000 |
hsa-miR-4723-5p |
gtCTCCCCCAtctgttaca |
2 |
UGGGGGAG | m8a | (m8a->m7a) | -1.006000 | -0.857000 |
0.070000 |
hsa-miR-5683 |
gtctccccCATCTGTtaca |
2 |
UACAGAUG | m7b | Disrupted | -0.001000 | no TS |
0.260000 |
hsa-miR-5698 |
gtCTCCCCCAtctgttaca |
2 |
UGGGGGAG | m8a | (m8a->m7a) | -0.995000 | -0.846000 |
0.500000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
97855197 | rs1443434 | G | G |
hsa-miR-181d-3p |
21 |
gcaCCCGGTGtac |
Disrupted |
N |
-0.298 |
T |
hsa-miR-4672 hsa-miR-6768-5p |
21 21 |
gcaccCTGTGTAc gcacCCTGTGTAc |
Created Created |
N N |
-0.024 -0.228 |
|||
97855667 | rs41274260 | T | T |
hsa-miR-3175 hsa-miR-4499 hsa-miR-873-3p |
4 6 6 |
cttcagTCTCCCC ctTCAGTCTcccc cttCAGTCTCccc |
Disrupted Disrupted Disrupted |
N N N |
-0.112 -0.063 -0.12 |
C |
hsa-miR-3929 hsa-miR-4419b hsa-miR-4478 hsa-miR-485-5p hsa-miR-6825-5p hsa-miR-6884-5p |
6 6 6 6 6 6 |
ctTCAGCCTcccc ctTCAGCCTcccc ctTCAGCCTcccc cttCAGCCTCccc cttcagCCTCCCC cttCAGCCTCccc |
Created Created Created Created Created Created |
N N N N N N |
-0.058 -0.068 -0.077 -0.114 -0.143 -0.151 |