SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_212482 |
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Gene Symbol: | FN1 |
Description: | Homo sapiens fibronectin 1 (FN1), transcript variant 3, mRNA. |
Gene Location: | chr2(-):216225178-216300791 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.215360735A>G | COSN6168849 | RK150_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.215360897A>G | COSN1824386 | RK004_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-2355-3p |
actgtggaAGGACAActgt |
0 | AUUGUCCU | m7b | Created | no TS | -0.157000 |
-0.900000 |
hsa-miR-3124-3p |
actgtGGAAAGacaactgt |
0 | ACUUUCCU | m6b | Disrupted | -0.340000 | -0.297000 |
0.020000 |
hsa-miR-3667-3p |
actgtGGAAGGacaactgt |
0 | ACCUUCCU | m6b | Created | no TS | -0.097000 |
-0.210000 |
hsa-miR-511 |
actgtggAAAGACAactgt |
0 | GUGUCUUU | m7b | Disrupted | -0.094000 | no TS |
-0.220000 |
hsa-miR-676-3p |
actgtggaAGGACAactgt |
0 | CUGUCCUA | m6b | Created | no TS | -0.108000 |
-3.890000 |
hsa-miR-2355-3p |
actgtggaAGGACAActgt |
0 | AUUGUCCU | m7b | Created | no TS | -0.157 |
-0.9 |
hsa-miR-3124-3p |
actgtGGAAAGacaactgt |
0 | ACUUUCCU | m6b | Disrupted | -0.34 | -0.297 |
5.87 |
hsa-miR-3667-3p |
actgtGGAAGGacaactgt |
0 | ACCUUCCU | m6b | Created | no TS | -0.097 |
-0.21 |
hsa-miR-511 |
actgtggAAAGACAactgt |
0 | GUGUCUUU | m7b | Disrupted | -0.094 | no TS |
-0.22 |
hsa-miR-676-3p |
actgtggaAGGACAactgt |
0 | CUGUCCUA | m6b | Created | no TS | -0.108 |
-3.89 |