SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

RefSeq ID:	NM_024301
Gene Symbol:	FKRP
Description:	Homo sapiens fukutin related protein (FKRP), transcript variant 2, mRNA.
Gene Location:	chr19(+):47249302-47261832
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation			Mutation ID		Sample Name		Cancer Type
chr19:g.46757943G>A			COSN15507746		AOCS-135-8-X		[ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-4679	ttctgaATCACAGctccac	0	UCUGUGAU	m7b	Created	no TS	-0.087000	0.020000
hsa-miR-558	ttctgaatcGCAGCTCcac	0	UGAGCUGC	m7b	(m7b->m6c)	-0.156000	no TS	0.570000
hsa-miR-4679	ttctgaATCACAGctccac	0	UCUGUGAU	m7b	Created	no TS	-0.087000	0.020000
hsa-miR-558	ttctgaatcGCAGCTCcac	0	UGAGCUGC	m7b	(m7b->m6c)	-0.156000	no TS	0.570000

Mutation			Mutation ID		Sample Name		Cancer Type
chr19:g.46758095A>T			COSN8261198		ASHPC_0017_Pa_P		[pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation			Mutation ID		Sample Name		Cancer Type
chr19:g.46758356G>T			COSN1769802		RK148_C01		[liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	Conservation	miRSeed	SeedClass	FuncClass	Wildtype CS+	Mutant CS+	PITA score change
hsa-miR-3163	tccttATTTTATtatgcac	0	UAUAAAAU	m7b	Created	no TS	0.021000	-3.470000
hsa-miR-3671	tcctTATTTGATtatgcac	2	AUCAAAUA	m8a	Disrupted	-0.053000	no TS	4.130000
hsa-miR-5692a	tccTTATTTGattatgcac	0	CAAAUAAU	m7a	(m7a->m6a)	0.239000	0.239000	-0.110000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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