SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000136 |
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Gene Symbol: | FANCC |
Description: | Homo sapiens Fanconi anemia, complementation group C (FANCC), transcript variant 1, mRNA. |
Gene Location: | chr9(-):97861335-98079991 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.95099161C>G | COSN2334589 | RK026_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-21-3p |
ccaaccagGGTGTTattcc |
0 | CAACACCA | m6b | Created | no TS | -0.103000 |
-0.020000 |
hsa-miR-3591-3p |
ccaaccagGGTGTTattcc |
0 | AAACACCA | m6b | Created | no TS | -0.089000 |
-0.010000 |
hsa-miR-3620 |
ccaacCAGGGTGttattcc |
1 |
UCACCCUG | m7b | Created | -0.131000 | -0.319000 | No effect |
hsa-miR-21-3p |
ccaaccagGGTGTTattcc |
0 | CAACACCA | m6b | Created | no TS | -0.103 |
-0.02 |
hsa-miR-3591-3p |
ccaaccagGGTGTTattcc |
0 | AAACACCA | m6b | Created | no TS | -0.089 |
-0.01 |
hsa-miR-3620 |
ccaacCAGGGTGttattcc |
0 | UCACCCUG | m7b | Created | -0.131 | -0.319 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.95100080A>C | COSN7578530 | 8048316 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-149-5p |
ctgactttaAGCCAGAact |
0 | UCUGGCUC | m7a | (m7a->m6a) | -0.263000 | -0.207000 |
0.380000 |
hsa-miR-3064-5p |
ctgactttaAGCCAGAact |
1 |
UCUGGCUG | m7a | (m7a->m6a) | -0.042000 | 0.003000 | No effect |
hsa-miR-4794 |
ctgactttaAGCCAGAact |
2 |
UCUGGCUA | m7a | (m7a->m6a) | -0.056000 | no TS |
0.320000 |
hsa-miR-664-5p |
ctgactttaAGCCAGaact |
2 |
ACUGGCUA | m6b | Disrupted | -0.056000 | no TS |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.95100373A>T | COSN9288154 | C0051T | [kidney][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4275 |
aatgcTAATTGatccactg |
0 | CCAAUUAC | m6b | Created | no TS | 0.117000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.95100903G>A | ICGC_81286CA4-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-450b-3p |
cacacctgtGATCCCAgca |
0 | UUGGGAUC | m7b | (m7b->m6b) | -0.068 | no TS |
1.86 |
hsa-miR-5089 |
cacacctgtAATCCCAgca |
0 | GUGGGAUU | m7b | (m6b->m7b) | -0.021 | -0.018 |
0.03 |
hsa-miR-513a-5p |
cacaCCTGTGAtcccagca |
0 | UUCACAGG | m7b | Disrupted | -0.046 | no TS |
0.01 |
hsa-miR-638 |
cacacctgtGATCCCagca |
0 | AGGGAUCG | m6b | Disrupted | -0.075 | no TS |
1.27 |
hsa-miR-769-3p |
cacacctgtGATCCCAGca |
0 | CUGGGAUC | m8a | (m8a->m7a) | -0.087 | no TS |
0.79 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.95101277T>C | COSN5708455 | RK082_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4294 |
tttAGACTCCttttaggag |
0 | GGGAGUCU | m7b | (m6c->m7b) | no TS | -0.253000 | No effect |
hsa-miR-5007-5p |
tttAGACTCTttttaggag |
0 | UAGAGUCU | m7b | (m7b->m6c) | -0.369000 | -0.148000 | No effect |