SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000134 |
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Gene Symbol: | FABP2 |
Description: | Homo sapiens fatty acid binding protein 2, intestinal (FABP2), mRNA. |
Gene Location: | chr4(-):120238404-120243316 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.119318380G>T | COSN14471002 | 8057490 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1323 |
gaactgGTTTTGAataatt |
0 | UCAAAACU | m7a | Created | no TS | 0.005000 |
-0.040000 |
|
hsa-miR-4272 |
gaactggttTTGAATaatt |
4 |
CAUUCAAC | m6b | Created | 0.074000 | 0.095000 |
-0.370000 |
|
hsa-miR-5003-5p |
gaactgGTTGTGAataatt |
3 |
UCACAACA | m7a | Disrupted | -0.191000 | -0.114000 | No effect | |
hsa-miR-548aa |
gaacTGGTTTTgaataatt |
0 | AAAAACCA | m7b | Created | no TS | -0.011000 |
-3.140000 |
|
hsa-miR-548ap-3p |
gaacTGGTTTTgaataatt |
0 | AAAAACCA | m7b | Created | no TS | -0.011000 |
-0.040000 |
|
hsa-miR-548at-3p |
gaactGGTTTTGaataatt |
0 | CAAAACCG | m7a | Created | NA | NA |
-1.530000 |
|
hsa-miR-548o-3p |
gaactgGTTTTGaataatt |
0 | CCAAAACU | m6b | Created | no TS | -0.005000 |
-7.300000 |
|
hsa-miR-548t-3p |
gaacTGGTTTTgaataatt |
0 | AAAAACCA | m7b | Created | no TS | -0.011000 |
-3.140000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.119318715G>A | COSN7772289 | ASHPC_0003_Pa_P_2 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4684-5p |
actgttttcGTAGAGAGag |
1 |
CUCUCUAC | m8a | (m8a->m7a) | -0.091000 | no TS |
-0.030000 |
|
hsa-miR-570-3p |
acTGTTTTCGtagagagag |
1 |
CGAAAACA | m8a | (m8a->m7b) | -0.139000 | -0.214000 |
-0.130000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr4:g.119318752G>C | COSN9900549 | C0096T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr4:g.119318976A>G | COSN167304 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4277 |
accAGAACTGtttatttca |
0 | GCAGUUCU | m7b | (m6c->m7b) | no TS | -0.197000 |
1.060000 |
hsa-miR-4277 |
accAGAACTGtttatttca |
0 | GCAGUUCU | m7b | (m6c->m7b) | no TS | -0.197 |
1.06 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
119318710 | rs74785845 | G | G |
hsa-miR-3183 hsa-miR-4684-5p hsa-miR-4723-3p hsa-miR-6769b-3p hsa-miR-6817-3p hsa-miR-6873-3p hsa-miR-6892-3p hsa-miR-7110-3p |
2 1 2 2 2 2 2 2 |
cgtagAGAGAGGg cGTAGAGAgaggg cgtagAGAGAGGg cgtagAGAGAGGg cgtAGAGAGAggg cgtAGAGAGAggg cgtagaGAGAGGG cgtaGAGAGAGgg |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N N N |
-0.134 -0.091 -0.125 -0.134 -0.05 -0.093 -0.218 -0.196 |
A |
hsa-miR-130b-5p |
2 |
cgtaGAAAGAGgg |
Created |
N |
-0.084 |
|||
119318976 | rs2964 | G | A |
hsa-miR-148b-5p hsa-miR-3121-3p hsa-miR-3168 hsa-miR-5584-3p hsa-miR-6874-3p |
0 |
AGAACTAtttatt agaaCTATTTAtt AGAACTAtttatt AGAACTAtttatt AGAACTAtttatt |
Created Created Created Created Created |
N N N N N |
-0.167 -0.021 -0.123 -0.108 -0.162 |
G |
hsa-miR-4277 |
0 |
AGAACTGtttatt |
Disrupted |
N |
-0.197 |