SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000129
Gene Symbol: F13A1
Description: Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1), mRNA.
Gene Location: chr6(-):6144310-6320924
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr6:g.6144109C>T COSN7889307 8031121 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-100-3p taatagAAGCTTaaaataa
6
CAAGCUUG m6b Disrupted -0.162000 no TS 0.260000
hsa-miR-4503 taatagaaGCTTAAAataa
9
UUUAAGCA m7a Disrupted -0.139000 no TS 4.080000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.6145522G>C COSN6325984 RK175_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1228-3p gacttAGGTGTGAagaccc
7
UCACACCU m8a Disrupted -0.516000 -0.141000 0.360000
hsa-miR-377-3p gacttagGTGTGAagaccc
6
AUCACACA m6b Disrupted -0.110000 no TS 0.060000
hsa-miR-412 gacttaggtGTGAAGaccc
9
ACUUCACC m6b Disrupted -0.150000 -0.083000 0.300000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser