SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_000119
Gene Symbol: EPB42
Description: Homo sapiens erythrocyte membrane protein band 4.2 (EPB42), transcript variant 1, mRNA.
Gene Location: chr15(-):43489425-43513323

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr15:g.43197249C>T COSN5397329 RK143_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-299-5p aatcTAAACCAaacatgtg
2
UGGUUUAC m7a Disrupted -0.115000 no TS 3.830000
hsa-miR-29b-2-5p aatctAAACCAaacatgtg
5
CUGGUUUC m6b Disrupted -0.070000 no TS 10.520000
hsa-miR-659-3p aatctaAACCAAacatgtg
4
CUUGGUUC m6b Disrupted -0.077000 no TS 2.440000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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