SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001039459 |
---|---|
Gene Symbol: | ELMO1 |
Description: | Homo sapiens engulfment and cell motility 1 (ELMO1), transcript variant 3, mRNA. |
Gene Location: | chr7(-):36892510-37024717 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.36853044T>G | COSN8800357 | SS6003115 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-196a-3p |
catctccTGTTGCCtgcag |
4 |
CGGCAACA | m7b | Disrupted | -0.335000 | -0.203000 |
1.180000 |
hsa-miR-4269 |
catctcctgGTGCCTGCag |
0 | GCAGGCAC | m8a | (m7a->m8a) | no TS | -0.164000 |
0.300000 |
hsa-miR-4733-3p |
catctCCTGGTGcctgcag |
0 | CCACCAGG | m7b | Created | no TS | -0.199000 |
-4.710000 |
hsa-miR-4742-5p |
catctcctgTTGCCTGcag |
3 |
UCAGGCAA | m7b | (m7b->m6b) | -0.142000 | no TS |
0.520000 |
hsa-miR-4768-3p |
caTCTCCTGGtgcctgcag |
2 |
CCAGGAGA | m8a | (m7b->m8a) | -0.168000 | -0.141000 |
0.100000 |
hsa-miR-593-5p |
catctccTGGTGCCTgcag |
0 | AGGCACCA | m8a | Created | no TS | -0.181000 |
-5.690000 |
hsa-miR-665 |
catCTCCTGGTgcctgcag |
7 |
ACCAGGAG | m8a | Created | -0.095000 | -0.302000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.36853408C>A | COSN9987188 | AOCS-163-1-4 | [ovary][NS][other][neoplasm] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1246 |
agatccAATCCATgaaaaa |
2 |
AAUGGAUU | m7b | Disrupted | -0.066000 | no TS |
-0.030000 |
hsa-miR-490-5p |
agatccaATCCATGaaaaa |
3 |
CCAUGGAU | m7b | Disrupted | -0.258000 | no TS |
0.220000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.36853843A>C | COSN14550953 | 8066081 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3142 |
actggAGGCCTTatcagga |
0 | AAGGCCUU | m7a | Created | NA | NA |
-1.970000 |
hsa-miR-3161 |
actggaggcCTTATCAGga |
0 | CUGAUAAG | m8a | (m7a->m8a) | no TS | 0.072000 |
-0.350000 |
hsa-miR-4753-5p |
actggaGGCCTTatcagga |
0 | CAAGGCCA | m6b | Created | no TS | -0.059000 |
-0.010000 |
hsa-miR-3142 |
actggAGGCCTTatcagga |
0 | AAGGCCUU | m7a | Created | NA | NA |
-1.970000 |
hsa-miR-3161 |
actggaggcCTTATCAGga |
0 | CUGAUAAG | m8a | (m7a->m8a) | no TS | 0.072000 |
-0.350000 |
hsa-miR-4753-5p |
actggaGGCCTTatcagga |
0 | CAAGGCCA | m6b | Created | no TS | -0.059000 |
-0.010000 |
hsa-miR-3142 |
actggAGGCCTTatcagga |
0 | AAGGCCUU | m7a | Created | NA | NA |
-1.970000 |
hsa-miR-3161 |
actggaggcCTTATCAGga |
0 | CUGAUAAG | m8a | (m7a->m8a) | no TS | 0.072000 |
-0.350000 |
hsa-miR-4753-5p |
actggaGGCCTTatcagga |
0 | CAAGGCCA | m6b | Created | no TS | -0.059000 |
-0.010000 |
hsa-miR-3142 |
actggAGGCCTTatcagga |
0 | AAGGCCUU | m7a | Created | NA | NA |
-1.970000 |
hsa-miR-3161 |
actggaggcCTTATCAGga |
0 | CUGAUAAG | m8a | (m7a->m8a) | no TS | 0.072000 |
-0.350000 |
hsa-miR-4753-5p |
actggaGGCCTTatcagga |
0 | CAAGGCCA | m6b | Created | no TS | -0.059000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.36854707C>T | COSN7979373 | 8066491 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-455-3p |
cctctaggaTGGACTGttg |
0 | GCAGUCCA | m7b | (m6b->m7b) | no TS | -0.131000 |
-0.850000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.36854818A>C | COSN8800358 | SS6003317 | [oesophagus][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-148b-5p |
caggcCAGAACTgccttct |
3 |
AAGUUCUG | m7b | Disrupted | -0.029000 | -0.090000 | No effect |
hsa-miR-2682-5p |
caggccagaACTGCCTtct |
2 |
CAGGCAGU | m7b | (m7b->m6b) | -0.097000 | no TS | No effect |
hsa-miR-34b-5p |
caggccagaACTGCCTtct |
2 |
UAGGCAGU | m7b | (m7b->m6b) | -0.088000 | no TS | No effect |
hsa-miR-4277 |
caggccAGAACTGCcttct |
2 |
GCAGUUCU | m8a | Disrupted | 0.058000 | no TS | No effect |
hsa-miR-449c-5p |
caggccagaACTGCCTtct |
2 |
UAGGCAGU | m7b | (m7b->m6b) | -0.097000 | no TS | No effect |
hsa-miR-4736 |
caggccagACCTGCCTtct |
0 | AGGCAGGU | m8a | Created | no TS | -0.131000 |
-0.030000 |
hsa-miR-548au-3p |
caggccagAACTGCCttct |
2 |
UGGCAGUU | m7b | Disrupted | -0.197000 | -0.139000 | No effect |
hsa-miR-940 |
caggccagaCCTGCCTTct |
0 | AAGGCAGG | m8a | (m7a->m8a) | no TS | -0.096000 |
0.140000 |