SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001105545
Gene Symbol: ECHDC1
Description: Homo sapiens enoyl CoA hydratase domain containing 1 (ECHDC1), transcript variant 1, mRNA.
Gene Location: chr6(-):127609856-127664754
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127289745T>G ICGC_ssm_v3_166276 HCC98T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-132-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.064 -0.91
hsa-miR-212-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.068 -0.32
hsa-miR-548a-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.114 -0.103 0.04
hsa-miR-548ab agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.133 -0.103 -0.24
hsa-miR-548ak agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.094 -0.074 0.73
hsa-miR-548am-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.085 -0.074 0.56
hsa-miR-548ap-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.103 -0.083 2.22
hsa-miR-548aq-5p agacTTACTTTtaatcatt
 0 GAAAGUAA m7b Disrupted -0.115 -0.085 1.01
hsa-miR-548ar-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.133 -0.103 0.47
hsa-miR-548as-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.076 -0.065 0.03
hsa-miR-548au-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.085 -0.074 0.24
hsa-miR-548av-5p agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 4.57
hsa-miR-548b-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.095 -0.084 0.02
hsa-miR-548c-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.085 -0.074 0.56
hsa-miR-548d-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.095 -0.084 -0.41
hsa-miR-548h-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.085 -0.074 0.01
hsa-miR-548i agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.123 -0.093 0.65
hsa-miR-548j agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.103 -0.083 2.16
hsa-miR-548k agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.23
hsa-miR-548l agactTACTTTTaatcatt
 0 AAAAGUAU m7a Disrupted NA NA No effect
hsa-miR-548n agactTACTTTTaatcatt
 0 CAAAAGUA m7b Disrupted -0.13 -0.084 -0.04
hsa-miR-548o-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.085 -0.074 0.56
hsa-miR-548t-5p agacttACTTTTaatcatt
 0 CAAAAGUG m6b Disrupted -0.181 -0.209 0.63
hsa-miR-548w agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.094 -0.074 2.05
hsa-miR-548y agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.115 -0.085 0.93
hsa-miR-559 agacTTACTTTtaatcatt
 0 UAAAGUAA m7b Disrupted -0.085 -0.037 2.65

Mutation Mutation ID Sample Name Cancer Type
chr6:g.127289923A>A ICGC_51022 TCGA-FU-A23K-01A-11D-A16O-08 CervicalSquamousCellCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1224-3p aacagtttgAGGTGGGcct
 0 CCCCACCU m7b (m6b->m7b) no TS -0.188 -1.65
hsa-miR-371a-5p aacaGTTTGAGgtgggcct
 0 ACUCAAAC m7b Created -0.048 -0.107 -0.15


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127290163A>C ICGC_1345947 TCGA-AX-A05Z-01A-11W-A027-09 UterineCorpusEndometrioidCarcinoma(TCGA,US)
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127290248T>G ICGC_ssm_v3_72916 HCC132T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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