SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001002030
Gene Symbol: ECHDC1
Description: Homo sapiens enoyl CoA hydratase domain containing 1 (ECHDC1), transcript variant 1, mRNA.
Gene Location: chr6(-):127609856-127664754
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127289177C>T COSN9295913 AOCS-091-1-3 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1244 aaacAACTACTgttgatgt
 2
 AAGUAGUU m7b Disrupted -0.124000 no TS No effect
hsa-miR-199a-3p aaacaACTACTGTtgatgt
 2
 ACAGUAGU m8a Disrupted -0.200000 no TS 0.750000
hsa-miR-199b-3p aaacaACTACTGTtgatgt
 2
 ACAGUAGU m8a Disrupted -0.200000 no TS 0.750000
hsa-miR-3129-5p aaacaACTACTGttgatgt
 2
 GCAGUAGU m7b Disrupted -0.200000 no TS 0.220000
hsa-miR-421 aaacaactaCTGTTGATgt
 2
 AUCAACAG m8a (m8a->m7a) -0.332000 -0.175000 -0.660000
hsa-miR-4703-3p aaaCAACTACtgttgatgt
 2
 UGUAGUUG m7b (m7b->m6c) -0.212000 no TS 0.250000
hsa-miR-4709-5p aaacaactACTGTTGatgt
 2
 ACAACAGU m7b Disrupted -0.547000 -0.283000 1.200000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.127289745T>G COSN1324630 HCC98T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-132-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.110000 -0.930000
hsa-miR-212-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.114000 -0.320000
hsa-miR-548a-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.290000 -0.220000 0.040000
hsa-miR-548ab agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 -0.240000
hsa-miR-548ak agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 0.730000
hsa-miR-548am-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548ap-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.220000
hsa-miR-548aq-5p agacTTACTTTtaatcatt
 2
 GAAAGUAA m7b Disrupted -0.291000 -0.202000 1.010000
hsa-miR-548ar-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 0.470000
hsa-miR-548as-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.252000 -0.182000 0.030000
hsa-miR-548au-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.240000
hsa-miR-548av-5p agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.190000
hsa-miR-548b-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 0.020000
hsa-miR-548c-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548d-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 -0.410000
hsa-miR-548h-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.010000
hsa-miR-548i agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.299000 -0.210000 0.650000
hsa-miR-548j agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.160000
hsa-miR-548k agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.230000
hsa-miR-548l agactTACTTTTaatcatt
 0 AAAAGUAU m7a Disrupted NA NA No effect
hsa-miR-548n agactTACTTTTaatcatt
 2
 CAAAAGUA m7b Disrupted -0.294000 -0.143000 -0.040000
hsa-miR-548o-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548t-5p agacttACTTTTaatcatt
 0 CAAAAGUG m6b Disrupted -0.286000 -0.268000 0.630000
hsa-miR-548w agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 2.050000
hsa-miR-548y agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.291000 -0.202000 0.930000
hsa-miR-559 agacTTACTTTtaatcatt
 2
 UAAAGUAA m7b Disrupted -0.261000 -0.154000 2.650000
hsa-miR-132-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.110000 -0.930000
hsa-miR-212-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.114000 -0.320000
hsa-miR-548a-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.290000 -0.220000 0.040000
hsa-miR-548ab agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 -0.240000
hsa-miR-548ak agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 0.730000
hsa-miR-548am-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548ap-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.220000
hsa-miR-548aq-5p agacTTACTTTtaatcatt
 2
 GAAAGUAA m7b Disrupted -0.291000 -0.202000 1.010000
hsa-miR-548ar-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 0.470000
hsa-miR-548as-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.252000 -0.182000 0.030000
hsa-miR-548au-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.240000
hsa-miR-548av-5p agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.190000
hsa-miR-548b-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 0.020000
hsa-miR-548c-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548d-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 -0.410000
hsa-miR-548h-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.010000
hsa-miR-548i agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.299000 -0.210000 0.650000
hsa-miR-548j agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.160000
hsa-miR-548k agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.230000
hsa-miR-548l agactTACTTTTaatcatt
 0 AAAAGUAU m7a Disrupted NA NA No effect
hsa-miR-548n agactTACTTTTaatcatt
 2
 CAAAAGUA m7b Disrupted -0.294000 -0.143000 -0.040000
hsa-miR-548o-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548t-5p agacttACTTTTaatcatt
 0 CAAAAGUG m6b Disrupted -0.286000 -0.268000 0.630000
hsa-miR-548w agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 2.050000
hsa-miR-548y agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.291000 -0.202000 0.930000
hsa-miR-559 agacTTACTTTtaatcatt
 2
 UAAAGUAA m7b Disrupted -0.261000 -0.154000 2.650000
hsa-miR-132-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.110000 -0.930000
hsa-miR-212-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.114000 -0.320000
hsa-miR-548a-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.290000 -0.220000 0.040000
hsa-miR-548ab agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 -0.240000
hsa-miR-548ak agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 0.730000
hsa-miR-548am-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548ap-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.220000
hsa-miR-548aq-5p agacTTACTTTtaatcatt
 2
 GAAAGUAA m7b Disrupted -0.291000 -0.202000 1.010000
hsa-miR-548ar-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.309000 -0.220000 0.470000
hsa-miR-548as-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.252000 -0.182000 0.030000
hsa-miR-548au-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.240000
hsa-miR-548av-5p agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.190000
hsa-miR-548b-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 0.020000
hsa-miR-548c-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548d-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.271000 -0.201000 -0.410000
hsa-miR-548h-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.010000
hsa-miR-548i agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.299000 -0.210000 0.650000
hsa-miR-548j agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.279000 -0.200000 2.160000
hsa-miR-548k agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.230000
hsa-miR-548l agactTACTTTTaatcatt
 0 AAAAGUAU m7a Disrupted NA NA No effect
hsa-miR-548n agactTACTTTTaatcatt
 2
 CAAAAGUA m7b Disrupted -0.294000 -0.143000 -0.040000
hsa-miR-548o-5p agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.261000 -0.191000 0.570000
hsa-miR-548t-5p agacttACTTTTaatcatt
 0 CAAAAGUG m6b Disrupted -0.286000 -0.268000 0.630000
hsa-miR-548w agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.270000 -0.191000 2.050000
hsa-miR-548y agacTTACTTTTaatcatt
 2
 AAAAGUAA m8a Disrupted -0.291000 -0.202000 0.930000
hsa-miR-559 agacTTACTTTtaatcatt
 2
 UAAAGUAA m7b Disrupted -0.261000 -0.154000 2.650000
hsa-miR-132-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.11 -0.93
hsa-miR-212-3p agacttACTGTTAatcatt
 0 UAACAGUC m7a Created no TS -0.114 -0.32
hsa-miR-548a-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.29 -0.22 0.04
hsa-miR-548ab agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.309 -0.22 -0.24
hsa-miR-548ak agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.27 -0.191 0.73
hsa-miR-548am-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.261 -0.191 0.57
hsa-miR-548ap-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.279 -0.2 2.22
hsa-miR-548aq-5p agacTTACTTTtaatcatt
 0 GAAAGUAA m7b Disrupted -0.291 -0.202 1.01
hsa-miR-548ar-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.309 -0.22 0.47
hsa-miR-548as-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.252 -0.182 0.03
hsa-miR-548au-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.261 -0.191 0.24
hsa-miR-548av-5p agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.19
hsa-miR-548b-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.271 -0.201 0.02
hsa-miR-548c-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.261 -0.191 0.57
hsa-miR-548d-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.271 -0.201 -0.41
hsa-miR-548h-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.261 -0.191 0.01
hsa-miR-548i agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.299 -0.21 0.65
hsa-miR-548j agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.279 -0.2 2.16
hsa-miR-548k agactTACTTTTaatcatt
 0 AAAAGUAC m7a Disrupted NA NA 0.23
hsa-miR-548l agactTACTTTTaatcatt
 0 AAAAGUAU m7a Disrupted NA NA No effect
hsa-miR-548n agactTACTTTTaatcatt
 0 CAAAAGUA m7b Disrupted -0.294 -0.143 -0.04
hsa-miR-548o-5p agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.261 -0.191 0.57
hsa-miR-548t-5p agacttACTTTTaatcatt
 0 CAAAAGUG m6b Disrupted -0.286 -0.268 0.63
hsa-miR-548w agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.27 -0.191 2.05
hsa-miR-548y agacTTACTTTTaatcatt
 0 AAAAGUAA m8a Disrupted -0.291 -0.202 0.93
hsa-miR-559 agacTTACTTTtaatcatt
 0 UAAAGUAA m7b Disrupted -0.261 -0.154 2.65

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



Genome Browser