SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_000108 |
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Gene Symbol: | DLD |
Description: | Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA. |
Gene Location: | chr7(+):107531585-107561643 |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.107919277A>T | COSN15330107 | SNUH_G76_S1 | [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1277-5p |
attatATATATTTttttct |
0 | AAAUAUAU | m8a | Disrupted | 0.000000 | 0.000000 |
0.020000 |
|
hsa-miR-5011-5p |
atTATATATAtttttttct |
0 | UAUAUAUA | m8a | (m8a->m7a) | 0.000000 | 0.000000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.107919288A>G | COSN1340253 | BN22T | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-205-3p |
ttttttCTGAAATttcctg |
11 |
GAUUUCAG | m7b | Disrupted | -0.252000 | -0.096000 |
0.100000 |
|
hsa-miR-3180-5p |
tttttTCTGGAAtttcctg |
0 | CUUCCAGA | m7b | Created | no TS | -0.221000 |
-0.030000 |
|
hsa-miR-513a-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-513c-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-520a-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.176000 |
-10.860000 |
|
hsa-miR-525-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.169000 |
-4.170000 |
|
hsa-miR-205-3p |
ttttttCTGAAATttcctg |
11 |
GAUUUCAG | m7b | Disrupted | -0.252000 | -0.096000 |
0.100000 |
|
hsa-miR-3180-5p |
tttttTCTGGAAtttcctg |
0 | CUUCCAGA | m7b | Created | no TS | -0.221000 |
-0.030000 |
|
hsa-miR-513a-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-513c-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-520a-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.176000 |
-10.860000 |
|
hsa-miR-525-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.169000 |
-4.170000 |
|
hsa-miR-205-3p |
ttttttCTGAAATttcctg |
11 |
GAUUUCAG | m7b | Disrupted | -0.252000 | -0.096000 |
0.100000 |
|
hsa-miR-3180-5p |
tttttTCTGGAAtttcctg |
0 | CUUCCAGA | m7b | Created | no TS | -0.221000 |
-0.030000 |
|
hsa-miR-513a-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-513c-3p |
ttttttctGAAATTTcctg |
8 |
UAAAUUUC | m7b | Disrupted | 0.296000 | 0.301000 | No effect | |
hsa-miR-520a-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.176000 |
-10.860000 |
|
hsa-miR-525-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.169000 |
-4.170000 |
|
hsa-miR-205-3p |
ttttttCTGAAATttcctg |
11 |
GAUUUCAG | m7b | Disrupted | -0.252 | -0.096 |
0.1 |
|
hsa-miR-3180-5p |
tttttTCTGGAAtttcctg |
0 | CUUCCAGA | m7b | Created | no TS | -0.221 |
-0.03 |
|
hsa-miR-513a-3p |
ttttttctGAAATTTcctg |
0 | UAAAUUUC | m7b | Disrupted | 0.296 | 0.301 | No effect | |
hsa-miR-513c-3p |
ttttttctGAAATTTcctg |
0 | UAAAUUUC | m7b | Disrupted | 0.296 | 0.301 | No effect | |
hsa-miR-520a-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.176 |
-10.86 |
|
hsa-miR-525-5p |
tttttTCTGGAatttcctg |
0 | CUCCAGAG | m6b | Created | no TS | -0.169 |
-4.17 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.107919505A>G | COSN9819235 | AOCS-091-1-3 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5091 |
tcctggaatGTCTCCGTca |
0 | ACGGAGAC | m8a | (m7b->m8a) | no TS | -0.343000 |
-4.000000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr7:g.107919902C>G | COSN8403777 | tumor_4163639 | [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1224-3p |
actcaaatAGGTGGGcatt |
0 | CCCCACCU | m7b | Created | no TS | -0.230000 |
-7.100000 |
|
hsa-miR-662 |
actcaaatACGTGGGcatt |
0 | UCCCACGU | m7b | Disrupted | -0.269000 | no TS |
7.150000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr7:g.107920193T>A | COSN2190860 | RK189_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-141-3p |
tctttaatCAGTGTTttcc |
0 | UAACACUG | m7b | Created | no TS | -0.119000 |
-0.770000 |
hsa-miR-200a-3p |
tctttaatCAGTGTTttcc |
0 | UAACACUG | m7b | Created | no TS | -0.091000 |
-0.160000 |
hsa-miR-3920 |
tcttTAATCAGTgttttcc |
0 | ACUGAUUA | m8a | Created | no TS | -0.060000 |
-6.870000 |
hsa-miR-141-3p |
tctttaatCAGTGTTttcc |
0 | UAACACUG | m7b | Created | no TS | -0.119000 |
-0.770000 |
hsa-miR-200a-3p |
tctttaatCAGTGTTttcc |
0 | UAACACUG | m7b | Created | no TS | -0.091000 |
-0.160000 |
hsa-miR-3920 |
tcttTAATCAGTgttttcc |
0 | ACUGAUUA | m8a | Created | no TS | -0.060000 |
-6.870000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
107919277 | rs8721 | A | A |
hsa-miR-1277-5p hsa-miR-190a-3p hsa-miR-5011-5p |
2 2 2 |
atATATATTtttt ATATATAtttttt aTATATATttttt |
Disrupted Disrupted Disrupted |
N N N |
No Change No Change No Change |
107919279 | rs145589369 | T | T |
hsa-miR-1277-5p |
2 |
ATATATTtttttc |
Disrupted |
N |
0.155 |
A |
hsa-miR-190a-3p hsa-miR-5011-5p |
2 2 |
ATATATAtttttc aTATATATttttc |
Created Created |
N N |
No Change -0.13 |
|||
107919287 | rs17154615 | G | G |
hsa-miR-205-3p hsa-miR-3606-3p hsa-miR-3942-3p hsa-miR-513a-3p hsa-miR-513c-3p |
11 8 10 8 8 |
ttttCTGAAATtt ttttctGAAATTT tttTCTGAAAttt ttttctGAAATTT ttttctGAAATTT |
Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N |
-0.156 -0.033 -0.126 -0.005 -0.005 |
T |
hsa-miR-3653 hsa-miR-3658 |
10 10 |
ttTTCTTAAattt ttTTCTTAAAttt |
Created Created |
N N |
-0.063 -0.237 |
|||
107919907 | rs57801571 | G | G |
hsa-miR-365a-3p hsa-miR-365b-3p hsa-miR-662 |
1 1 2 |
acgtGGGCATTca acgtGGGCATTca ACGTGGGcattca |
Disrupted Disrupted Disrupted |
N N N |
-0.179 -0.179 -0.269 |