SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_133503 |
---|---|
Gene Symbol: | DCN |
Description: | Homo sapiens decorin (DCN), transcript variant A1, mRNA. |
Gene Location: | chr12(-):91539034-91573359 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.91145300C>G | COSN5331426 | RK298_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-10a-3p |
ctgatgtttGAATTTaccc |
0 | CAAAUUCG | m6b | Created | no TS | -0.022000 |
-6.480000 |
|
hsa-miR-4760-3p |
ctgatgttTGAATTTaccc |
0 | AAAUUCAU | m7a | Created | NA | NA |
-2.730000 |
|
hsa-miR-494 |
ctgATGTTTCAatttaccc |
2 |
UGAAACAU | m8a | Disrupted | -0.196000 | no TS |
4.470000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr12:g.91145332C>T | COSN5331427 | RK125_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1277-5p |
caaagcATATATTTcctga |
0 | AAAUAUAU | m8a | Created | no TS | 0.045000 |
-0.060000 |
|
hsa-miR-5093 |
caaagcataCATTTCCTga |
0 | AGGAAAUG | m8a | (m8a->m7a) | -0.291000 | -0.125000 |
1.590000 |
|
hsa-miR-675-3p |
caaaGCATACAtttcctga |
0 | CUGUAUGC | m7b | Disrupted | -0.260000 | no TS |
0.500000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr12:g.91145627G>A | COSN9084881 | 8051715 | [pancreas][NS][carcinoid-endocrine_tumour][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3923 |
atcatTACTAGTaaagcct |
0 | AACUAGUA | m7b | Created | no TS | -0.358000 |
-2.370000 |
hsa-miR-628-3p |
atcaTTACTAGtaaagcct |
1 |
UCUAGUAA | m7b | Created | -0.110000 | -0.275000 |
-2.320000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
91145738 | rs3138290 | C | C |
hsa-miR-1343-3p hsa-miR-3690 hsa-miR-4254 hsa-miR-5093 hsa-miR-6783-3p hsa-miR-875-3p |
6 6 6 4 6 4 |
taatttCCAGGAA taattTCCAGGAa taattTCCAGGAa taATTTCCAggaa taatttCCAGGAA taaTTTCCAGgaa |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.17 -0.205 -0.187 -0.057 -0.177 -0.206 |
T |
hsa-miR-1200 hsa-miR-3140-5p hsa-miR-378a-5p |
6 6 6 |
taatttTCAGGAA taattTTCAGGAa taatttTCAGGAA |
Created Created Created |
N N N |
-0.164 -0.173 -0.153 |