SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_001340
Gene Symbol: CYLC2
Description: Homo sapiens cylicin, basic protein of sperm head cytoskeleton 2 (CYLC2), mRNA.
Gene Location: chr9(+):105757592-105780770
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.103005819A>T ICGC_sm402819 RK100_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3713 aagaaGGATACaaaggaga
 0 GGUAUCCG m6b Disrupted -0.192 no TS 0.09
hsa-miR-500a-5p aagAAGGATTcaaaggaga
 0 UAAUCCUU m7b (m6b->m7b) -0.118 -0.268 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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